[med-svn] [Git][med-team/bcbio][master] Update for newly packaged StringTie

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
e52b1511 by Steffen Möller at 2019-03-21T13:55:21Z
Update for newly packaged StringTie

- - - - -


3 changed files:

- debian/TODO
- debian/changelog
- debian/control


Changes:

=====================================
debian/TODO
=====================================
@@ -37,9 +37,7 @@ https://github.com/ewels/MultiQC
 package sailfish
 https://github.com/kingsfordgroup/sailfish
 
-package stringtie
-http://ccb.jhu.edu/software/stringtie/
-http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.5.tar.gz
+package stringtie - done: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=924101
 
 package kallisto
 


=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-bcbio (1.1.3-1) UNRELEASED; urgency=medium
+bcbio (1.1.3-1) unstable; urgency=medium
 
   * Team upload.
   * New upstream release.


=====================================
debian/control
=====================================
@@ -77,10 +77,14 @@ Recommends: bcftools,
 	    sambamba,
 	    samblaster,
             samtools,
+            salmon,
 	    subread,
             tabix,
             wget
-Suggests: toil, cwltool,
+Suggests: toil,
+          cwltool,
+          stringtie,
+          kallisto,
           bcbio-doc
 Description: toolkit for analysing high-throughput sequencing data
  This package installs the command line tools of the bcbio-nextgen



View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/e52b151133c3af226fb80401eb54497bfa1c4e87

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/e52b151133c3af226fb80401eb54497bfa1c4e87
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