[med-svn] [Git][med-team/bcbio][master] 4 commits: Update of TODO, bits here and there

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
a15afab3 by Steffen Möller at 2019-05-24T16:38:31Z
Update of TODO, bits here and there

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4016ff05 by Steffen Möller at 2019-05-24T16:40:28Z
New upstream version 1.1.5
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0df836e7 by Steffen Möller at 2019-05-24T16:41:00Z
Update upstream source from tag 'upstream/1.1.5'

Update to upstream version '1.1.5'
with Debian dir a0525dd819b71479a92efedcb8f9b18da0656bd2
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c2724712 by Steffen Möller at 2019-05-24T16:47:17Z
New upstream version.

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30 changed files:

- .travis.yml
- HISTORY.md
- bcbio/distributed/ipythontasks.py
- bcbio/galaxy/nglims.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/pipeline/region.py
- bcbio/pipeline/run_info.py
- bcbio/provenance/system.py
- bcbio/qc/multiqc.py
- bcbio/qc/srna.py
- bcbio/rnaseq/ericscript.py
- bcbio/rnaseq/gtf.py
- bcbio/srna/mirdeep.py
- bcbio/structural/prioritize.py
- bcbio/structural/regions.py
- bcbio/structural/shared.py
- bcbio/utils.py
- bcbio/variation/coverage.py
- bcbio/variation/gatkfilter.py
- bcbio/variation/mutect2.py
- debian/TODO
- debian/changelog
- debian/control
- debian/patches/series
- docs/conf.py
- docs/contents/cloud.rst
- docs/contents/configuration.rst
- docs/contents/installation.rst
- docs/contents/parallel.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/c96b034925066b9d42b618be9235267830e8f58b...c27247126fe04bd8d18542d3204c6bbabc26fbf9

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/c96b034925066b9d42b618be9235267830e8f58b...c27247126fe04bd8d18542d3204c6bbabc26fbf9
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