[med-svn] [Git][med-team/racon][master] Set the racon_wrapper to use /usr/bin/rampler

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / racon


Commits:
f4113ce1 by Michael R. Crusoe at 2019-11-12T14:45:04Z
Set the racon_wrapper to use /usr/bin/rampler

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/use_debian_packaged_libs.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+racon (1.4.10-2) UNRELEASED; urgency=medium
+
+  * Set the racon_wrapper to use /usr/bin/rampler
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Tue, 12 Nov 2019 15:44:13 +0100
+
 racon (1.4.10-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -21,7 +21,7 @@ Package: racon
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends}
-Recommends: python3
+Recommends: python3, rampler
 Description: consensus module for raw de novo DNA assembly of long uncorrected reads
  Racon is intended as a standalone consensus module to correct raw
  contigs generated by rapid assembly methods which do not include a


=====================================
debian/patches/use_debian_packaged_libs.patch
=====================================
@@ -46,3 +46,12 @@ Description: Use Debian packaged libraries
      if (racon_enable_cuda)
          target_link_libraries(racon_test cudapoa cudaaligner)
      endif()
+@@ -130,7 +115,7 @@
+ 
+ if (racon_build_wrapper)
+     set(racon_path ${PROJECT_BINARY_DIR}/bin/racon)
+-    set(rampler_path ${PROJECT_BINARY_DIR}/vendor/rampler/bin/rampler)
++    set(rampler_path /usr/bin/rampler)
+     configure_file(${PROJECT_SOURCE_DIR}/scripts/racon_wrapper.py
+         ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper)
+     file(COPY ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper



View it on GitLab: https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207

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View it on GitLab: https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207
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