[med-svn] [Git][med-team/salmon][master] 9 commits: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / salmon


Commits:
803ed557 by Michael R. Crusoe at 2019-11-14T13:52:13Z
New upstream version

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8cda0556 by Michael R. Crusoe at 2019-11-14T13:52:14Z
New upstream version 1.0.0+ds1
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feae1c21 by Michael R. Crusoe at 2019-11-14T13:52:18Z
Update upstream source from tag 'upstream/1.0.0+ds1'

Update to upstream version '1.0.0+ds1'
with Debian dir e88382c09bb096815bc75f751a608afb05b3a49d
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2d91a366 by Michael R. Crusoe at 2019-11-14T13:52:19Z
debhelper-compat 12

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50f4ae14 by Michael R. Crusoe at 2019-11-14T13:52:22Z
Standards-Version: 4.4.0

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ca6a6a7a by Michael R. Crusoe at 2019-11-14T13:54:18Z
trim the Files-Excluded list

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42d6c36a by Michael R. Crusoe at 2019-11-14T14:05:35Z
update patches

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725cba44 by Michael R. Crusoe at 2019-11-14T14:06:16Z
update my email address

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973f063b by Michael R. Crusoe at 2019-11-17T16:02:51Z
document pufferfish missing package

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30 changed files:

- .drone/build.sh
- .travis.yml
- CMakeLists.txt
- README.md
- + cmake/Modules/FindCereal.cmake
- + cmake/Modules/Findlibdivsufsort.cmake
- + cmake/Modules/Findlibgff.cmake
- + cmake/Modules/Findlibstadenio.cmake
- cmake/TestSalmonQuasi.cmake
- current_version.txt
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/patches/disable-version-check.patch
- debian/patches/use_debian_packaged_libs.patch
- doc/source/alevin.rst
- doc/source/conf.py
- doc/source/library_type.rst
- doc/source/salmon.rst
- doc/steps_to_prepare_release.md
- docker/Dockerfile
- docker/build_test.sh
- + include/AlevinHash.hpp
- include/AlevinOpts.hpp
- include/AlevinTypes.hpp
- include/AlevinUtils.hpp
- include/AlignmentGroup.hpp
- include/AlignmentLibrary.hpp
- include/BAMQueue.tpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/compare/69a2f15b764a7e92d6800523f6de1869aa1635c7...973f063bdeea9f6e06a20958debec97733de2b63

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View it on GitLab: https://salsa.debian.org/med-team/salmon/compare/69a2f15b764a7e92d6800523f6de1869aa1635c7...973f063bdeea9f6e06a20958debec97733de2b63
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