[med-svn] [Git][med-team/salmon][upstream] New upstream version 1.0.0+ds1

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / salmon


Commits:
8cda0556 by Michael R. Crusoe at 2019-11-14T13:52:14Z
New upstream version 1.0.0+ds1
- - - - -


30 changed files:

- .drone/build.sh
- .travis.yml
- CMakeLists.txt
- README.md
- + cmake/Modules/FindCereal.cmake
- + cmake/Modules/Findlibdivsufsort.cmake
- + cmake/Modules/Findlibgff.cmake
- + cmake/Modules/Findlibstadenio.cmake
- cmake/TestSalmonQuasi.cmake
- current_version.txt
- doc/source/alevin.rst
- doc/source/conf.py
- doc/source/library_type.rst
- doc/source/salmon.rst
- doc/steps_to_prepare_release.md
- docker/Dockerfile
- docker/build_test.sh
- + include/AlevinHash.hpp
- include/AlevinOpts.hpp
- include/AlevinTypes.hpp
- include/AlevinUtils.hpp
- include/AlignmentGroup.hpp
- include/AlignmentLibrary.hpp
- include/BAMQueue.tpp
- + include/BAMUtils.hpp
- include/BarcodeGroup.hpp
- include/CollapsedCellOptimizer.hpp
- include/DedupUMI.hpp
- include/DistributionUtils.hpp
- include/EquivalenceClassBuilder.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/commit/8cda0556c049b9ca06e6625f6be28c7910ae79c9

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