[med-svn] [Git][med-team/bcbio][master] 4 commits: New upstream version 1.1.8

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
53ab0439 by Steffen Möller at 2019-11-26T13:04:48Z
New upstream version 1.1.8
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a5293ff5 by Steffen Möller at 2019-11-26T13:05:21Z
Update upstream source from tag 'upstream/1.1.8'

Update to upstream version '1.1.8'
with Debian dir dccece22a779c9ca1c16312e490da041b115be33
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24238083 by Steffen Möller at 2019-11-26T13:17:20Z
New upstream version

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ca3194e5 by Steffen Möller at 2019-11-26T13:50:05Z
Updated TODO and d/control with insights from bioconda

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30 changed files:

- HISTORY.md
- README.rst
- artwork/logo.png
- bcbio/bam/__init__.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- bcbio/ngsalign/bowtie2.py
- bcbio/ngsalign/bwa.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/run_info.py
- bcbio/qc/fastqc.py
- bcbio/variation/effects.py
- bcbio/variation/population.py
- bcbio/variation/vardict.py
- config/genomes/BDGP6-resources.yaml
- config/genomes/GRCh37-resources.yaml
- config/genomes/GRCz11-resources.yaml
- config/genomes/Sscrofa11.1-resources.yaml
- config/genomes/WBcel235-resources.yaml
- config/genomes/canFam3-resources.yaml
- config/genomes/dm3-resources.yaml
- config/genomes/galGal4-resources.yaml
- config/genomes/hg19-resources.yaml
- config/genomes/hg38-noalt-resources.yaml
- config/genomes/hg38-resources.yaml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/fbfaf7460e65fbb6b3078c61002f15cec9ce16ad...ca3194e5e322a67a08cbb228b45716f01f2b7a64

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/fbfaf7460e65fbb6b3078c61002f15cec9ce16ad...ca3194e5e322a67a08cbb228b45716f01f2b7a64
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