[med-svn] [Git][med-team/bcbio][upstream] 2 commits: New upstream version 1.1.7

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
b50e6f19 by Steffen Möller at 2019-10-19T12:01:29Z
New upstream version 1.1.7
- - - - -
53ab0439 by Steffen Möller at 2019-11-26T13:04:48Z
New upstream version 1.1.8
- - - - -


30 changed files:

- + CODE_OF_CONDUCT.md
- HISTORY.md
- README.rst
- artwork/logo.png
- bcbio/bam/__init__.py
- bcbio/bam/coverage.py
- bcbio/bam/fastq.py
- bcbio/broad/__init__.py
- bcbio/chipseq/__init__.py
- + bcbio/chipseq/antibodies.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/distributed/ipythontasks.py
- bcbio/distributed/multitasks.py
- bcbio/distributed/runfn.py
- bcbio/heterogeneity/bubbletree.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/hla/optitype.py
- bcbio/illumina/flowcell.py
- bcbio/illumina/machine.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- + bcbio/ngsalign/bismark.py
- bcbio/ngsalign/bowtie2.py
- + bcbio/ngsalign/bsmap.py
- bcbio/ngsalign/bwa.py
- bcbio/ngsalign/postalign.py
- bcbio/ngsalign/star.py
- bcbio/pipeline/alignment.py
- bcbio/pipeline/datadict.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/4016ff058ea96bdb5999731d4add1cd2d9dcaf2d...53ab04392283172ee3ac50b07db046ac5f682a05

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/4016ff058ea96bdb5999731d4add1cd2d9dcaf2d...53ab04392283172ee3ac50b07db046ac5f682a05
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