[med-svn] [Git][med-team/profnet][master] 8 commits: debhelper-compat 12
Michael R. Crusoe
gitlab at salsa.debian.org
Thu Oct 3 11:06:13 BST 2019
Michael R. Crusoe pushed to branch master at Debian Med / profnet
Commits:
3e9d345a by Michael R. Crusoe at 2019-10-03T09:45:07Z
debhelper-compat 12
- - - - -
d261b600 by Michael R. Crusoe at 2019-10-03T09:51:24Z
Standards-Version: 4.4.1
- - - - -
fb1b0496 by Michael R. Crusoe at 2019-10-03T09:51:43Z
Remove trailing whitespace in debian/changelog
- - - - -
dd069c95 by Michael R. Crusoe at 2019-10-03T09:51:44Z
Remove trailing whitespace in debian/copyright
- - - - -
cfb6cd38 by Michael R. Crusoe at 2019-10-03T09:51:44Z
Use secure URI in Homepage field.
Fixes lintian: homepage-field-uses-insecure-uri
See https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html for more details.
- - - - -
ee3c2d3d by Michael R. Crusoe at 2019-10-03T09:51:44Z
Set upstream metadata fields: Contact, Name.
- - - - -
c5a792a3 by Michael R. Crusoe at 2019-10-03T09:51:44Z
fix a spelling typo
- - - - -
dea8b737 by Michael R. Crusoe at 2019-10-03T09:53:04Z
hardening works, remove comment to the contrary
- - - - -
8 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/patches/series
- + debian/patches/spelling
- debian/rules
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+profnet (1.0.22-7) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * debhelper-compat 12
+ * Standards-Version: 4.4.1
+ * Remove trailing whitespace in debian/changelog
+ * Remove trailing whitespace in debian/copyright
+ * Use secure URI in Homepage field.
+ * Set upstream metadata fields: Contact, Name.
+ * Fix a spelling typo
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com> Thu, 03 Oct 2019 11:45:07 +0200
+
profnet (1.0.22-6) unstable; urgency=medium
* debhelper 11
@@ -29,11 +42,11 @@ profnet (1.0.22-3) unstable; urgency=medium
* cme fix dpkg-control
* add example file and testsuite for profnet-prof
* same testsuite works for several other packages (profnet-chop, profnet-con,
- profnet-isis, profnet-snapfun). Add debian/*.examples files for these
- packages and add to debian/tests/control
+ profnet-isis, profnet-snapfun). Add debian/*.examples files for these
+ packages and add to debian/tests/control
* mention debian/examples/PROFacc_tst.jct in debian/copyright
* add debian/docs, debian/README.test
- * change debian/docs to set of {package}.docs for packages profnet-chop,
+ * change debian/docs to set of {package}.docs for packages profnet-chop,
profnet-con, profnet-isis, profnet-snapfun, profnet-prof.
[ Andreas Tille ]
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -5,13 +5,13 @@ Uploaders: Guy Yachdav <gyachdav at rostlab.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 12),
gfortran,
rsync
-Standards-Version: 4.2.1
+Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/profnet
Vcs-Git: https://salsa.debian.org/med-team/profnet.git
-Homepage: http://www.predictprotein.org/
+Homepage: https://www.predictprotein.org/
Package: profnet-bval
Architecture: any
=====================================
debian/copyright
=====================================
@@ -9,7 +9,7 @@ Copyright:
EMBL
CUBIC (Columbia University, NY, USA)
LION Biosciences (Heidelberg, DE)
- .
+ .
Copyright (C) 2009-2011 by Laszlo Kajan <lkajan at rostlab.org>
Technical University Munich (DE)
.
@@ -34,11 +34,11 @@ Copyright:
2009-2013 L. Kajan <lkajan at rostlab.org> Laszlo Kajan <lkajan at rostlab.org> Technical University Munich (DE)
License: GPL-2+
Comment:
- Although file named PROFacc_test.jct is mentioned in upstream's src and
- *_dir folders, namely, in command in RUN-special file, it wasn't present
- in upstream.
+ Although file named PROFacc_test.jct is mentioned in upstream's src and
+ *_dir folders, namely, in command in RUN-special file, it wasn't present
+ in upstream.
.
- It was found in `profphd` package's upstream src/prof/net/ folder and
+ It was found in `profphd` package's upstream src/prof/net/ folder and
inherits corresponding license.
License: GPL-2+
@@ -46,12 +46,12 @@ License: GPL-2+
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
- .
+ .
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
- .
+ .
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
.
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
hardening.patch
+spelling
=====================================
debian/patches/spelling
=====================================
@@ -0,0 +1,11 @@
+--- profnet.orig/src-phd/phd.f
++++ profnet/src-phd/phd.f
+@@ -283,7 +283,7 @@
+ WRITE(6,'(T2,70A1)')('*',ITER=1,70)
+ WRITE(6,'(T2,A3)')'***'
+ WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3),
+- + 'An error occurred: the adressed HSSP file is empty.'
++ + 'An error occurred: the addressed HSSP file is empty.'
+ WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3),
+ + 'Program has stopped consequently !'
+ WRITE(6,'(T2,A3)')'***'
=====================================
debian/rules
=====================================
@@ -2,7 +2,6 @@
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
-# Somehow the hardening options are not propagated
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
=====================================
debian/upstream/metadata
=====================================
@@ -1,20 +1,21 @@
Reference:
- - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost
- Journal: Bioinformatics
- Year: 2006 Apr 1
- Volume: 22
- Number: 7
- Pages: 891-893
- Title: "OPRFbval: predict flexible and rigid residues in proteins"
- PMID: 16455751
- DOI: 10.1093/bioinformatics/btl032
- URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796
- ePrint: "https://academic.oup.com/bioinformatics/article-pdf/\
- 22/7/891/523458/btl032.pdf"
+- Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost
+ Journal: Bioinformatics
+ Year: 2006 Apr 1
+ Volume: 22
+ Number: 7
+ Pages: 891-893
+ Title: "OPRFbval: predict flexible and rigid residues in proteins"
+ PMID: 16455751
+ DOI: 10.1093/bioinformatics/btl032
+ URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796
+ ePrint: "https://academic.oup.com/bioinformatics/article-pdf/22/7/891/523458/btl032.pdf"
Registry:
- - Name: OMICtools
- Entry: OMICS_09791
- - Name: bio.tools
- Entry: NA
- - Name: SciCrunch
- Entry: NA
+- Name: OMICtools
+ Entry: OMICS_09791
+- Name: bio.tools
+ Entry: NA
+- Name: SciCrunch
+ Entry: NA
+Name: profnet
+Contact: assistant at rostlab.org
View it on GitLab: https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b
--
View it on GitLab: https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b
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