[med-svn] [Git][med-team/snakemake][master] 11 commits: Skip test_url_include in the autopkgtest

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / snakemake


Commits:
1d971c02 by Michael R. Crusoe at 2019-10-30T15:09:05Z
Skip test_url_include in the autopkgtest

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b75bcfd3 by Michael R. Crusoe at 2019-10-30T15:12:33Z
upstream is now using GitHub

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9674274b by Michael R. Crusoe at 2019-10-30T15:12:53Z
New upstream version

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6729ed4f by Michael R. Crusoe at 2019-10-30T15:12:54Z
New upstream version 5.7.4
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eab13697 by Michael R. Crusoe at 2019-10-30T15:13:02Z
Update upstream source from tag 'upstream/5.7.4'

Update to upstream version '5.7.4'
with Debian dir 3982a972f45063ec4b08dc52f81ee49fe49d2939
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22947817 by Michael R. Crusoe at 2019-10-30T15:19:59Z
freshen patches

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4d1bfa61 by Michael R. Crusoe at 2019-10-30T15:24:12Z
Set upstream metadata fields: Repository.

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06b9ca3b by Michael R. Crusoe at 2019-10-30T16:03:15Z
Adapt some of the new tests to use python3 instead of python

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1a3221f5 by Michael R. Crusoe at 2019-10-30T16:09:08Z
make sure autopkgtests are run on the patched source

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81bebe9b by Michael R. Crusoe at 2019-10-30T16:27:12Z
copy the source before running autopkgtests

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ed9e8eb6 by Michael R. Crusoe at 2019-10-30T16:27:12Z
release to unstable

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30 changed files:

- − .circleci/common.sh
- − .circleci/config.yml
- − .circleci/setup.sh
- + .coveragerc
- .gitattributes
- + .github/ISSUE_TEMPLATE/bug_report.md
- + .github/ISSUE_TEMPLATE/feature_request.md
- + .github/workflows/main.yml
- .gitignore
- tests/test_omitfrom/expected-results/leveltwo_first.txt → .sonarcloud.properties
- CHANGELOG.rst
- Dockerfile
- MANIFEST.in
- README.md
- debian/changelog
- debian/clean
- debian/control
- debian/copyright
- debian/patches/0003-Use-debian-s-mathjax-package.patch
- debian/patches/0011-fix-privacy-breach.patch
- debian/patches/0012-reproducible-build.patch
- debian/patches/boto3_is_just_boto
- + debian/patches/python3
- debian/patches/series
- debian/tests/control
- debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch
- docs/executable.rst
- docs/getting_started/installation.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/84a608c9045b3a1ab98a3e7b484dab5e117a714d...ed9e8eb66d11f59c79843d40264646b4d4366dd1

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View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/84a608c9045b3a1ab98a3e7b484dab5e117a714d...ed9e8eb66d11f59c79843d40264646b4d4366dd1
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