[med-svn] [Git][med-team/libvcflib][master] 7 commits: New upstream version 1.0.0+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / libvcflib


Commits:
18f9a566 by Michael R. Crusoe at 2019-09-04T00:51:02Z
New upstream version 1.0.0+dfsg
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67089301 by Michael R. Crusoe at 2019-09-04T00:51:22Z
Update upstream source from tag 'upstream/1.0.0+dfsg'

Update to upstream version '1.0.0+dfsg'
with Debian dir 04b8561a5a8b5373f5ac59d18b79f06ef247bd45
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ec7b9c68 by Michael R. Crusoe at 2019-09-04T02:48:06Z
New upstream version

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acb1ec1d by Michael R. Crusoe at 2019-09-04T03:05:29Z
add autopkgtests courtesy upstream

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38b9dd6c by Michael R. Crusoe at 2019-09-04T03:10:20Z
override the version

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13ed97d0 by Michael R. Crusoe at 2019-09-04T03:15:18Z
reference upstream libraries in our hand-written pkg config

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2c4db277 by Michael R. Crusoe at 2019-09-04T03:49:42Z
improve hardening

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30 changed files:

- Makefile
- README.md
- debian/changelog
- debian/include/IntervalTree.h
- debian/libvcflib-tools.install
- + debian/patches/dont_link_pthread
- debian/patches/filevercmp.h.patch
- debian/patches/fix_installation.patch
- + debian/patches/hardening-flags
- debian/patches/intervaltree.patch
- debian/patches/keep_R_files.patch
- + debian/patches/override_version
- debian/patches/pkg-config.patch
- debian/patches/series
- debian/patches/shared_lib.patch
- debian/patches/use_debian_packaged_fastahack.patch
- debian/patches/use_debian_packaged_libssw.patch
- debian/patches/use_debian_packaged_smithwaterman.patch
- debian/patches/use_debian_packaged_tabixpp.patch
- debian/rules
- + debian/tests/control
- scripts/vcf2bed.py
- scripts/vcf2sqlite.py
- scripts/vcfclearid
- scripts/vcfclearinfo
- scripts/vcffirstheader
- scripts/vcfnulldotslashdot
- src/BedReader.h
- src/Variant.cpp
- src/Variant.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/92642620e9f164eef2acde71efaaa85efac09f60...2c4db2773d3272b4c128604aa1c1ba0b8dd74564

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View it on GitLab: https://salsa.debian.org/med-team/libvcflib/compare/92642620e9f164eef2acde71efaaa85efac09f60...2c4db2773d3272b4c128604aa1c1ba0b8dd74564
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