[med-svn] [Git][med-team/ariba][upstream] New upstream version 2.14.3+ds

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / ariba


Commits:
5aef8353 by Sascha Steinbiss at 2019-09-09T19:05:20Z
New upstream version 2.14.3+ds
- - - - -


30 changed files:

- CHANGELOG.md
- Dockerfile
- ariba/ref_preparer.py
- ariba/reference_data.py
- ariba/tasks/prepareref.py
- + ariba/tests/data/ref_preparer_test_run.in.4.fa
- + ariba/tests/data/ref_preparer_test_run.in.4.tsv
- ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log
- + ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa
- + ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa
- + ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log
- + ariba/tests/data/reference_data_remove_bad_noncoding.in.fa
- + ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv
- + ariba/tests/data/reference_data_test_remove_bad_noncoding.log
- ariba/tests/ref_preparer_test.py
- ariba/tests/reference_data_test.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ariba/commit/5aef83534cfbb62b44e7dc2a73ca586dfe926d43

-- 
View it on GitLab: https://salsa.debian.org/med-team/ariba/commit/5aef83534cfbb62b44e7dc2a73ca586dfe926d43
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190909/62f04149/attachment-0001.html>