[med-svn] [Git][med-team/augustus][master] 8 commits: New upstream version 3.3.3+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch master at Debian Med / augustus


Commits:
3edf606c by Sascha Steinbiss at 2019-09-18T20:53:25Z
New upstream version 3.3.3+dfsg
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57204725 by Sascha Steinbiss at 2019-09-18T21:03:02Z
Update upstream source from tag 'upstream/3.3.3+dfsg'

Update to upstream version '3.3.3+dfsg'
with Debian dir e2c5af77b9a84757d1d8ddf42a134cf487d87266
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8ba03f1d by Sascha Steinbiss at 2019-09-18T22:16:53Z
new upstream release

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097764cb by Sascha Steinbiss at 2019-09-18T22:17:08Z
remove obsolete entry in doc-base

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f027b1a4 by Sascha Steinbiss at 2019-09-18T22:17:27Z
use debhelper 12

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cabf370d by Sascha Steinbiss at 2019-09-18T22:17:36Z
bump Standards-Version

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643e6a5d by Sascha Steinbiss at 2019-09-18T22:17:50Z
fix interpreter paths in Perl scripts

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3fc379ff by Sascha Steinbiss at 2019-09-18T22:18:06Z
refresh patches

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30 changed files:

- .gitignore
- .travis.yml
- Dockerfile
- + Dockerfile-cgp-file
- + Dockerfile-cgp-mysql
- + Dockerfile-cgp-sqlite
- HISTORY.TXT
- Makefile
- + README-cgp.md
- − README-cgp.txt
- README.md
- auxprogs/bam2hints/Makefile
- auxprogs/bam2hints/bam2hints.cc
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.txt
- auxprogs/bam2wig/bam2wig.c
- auxprogs/filterBam/src/filterBam.cc
- auxprogs/filterBam/src/functions/MatePairs.cc
- auxprogs/filterBam/src/functions/PairednessCoverage.cc
- auxprogs/filterBam/src/functions/SingleAlignment.cc
- auxprogs/filterBam/src/functions/initOptions.cc
- auxprogs/filterBam/src/headers/filterBam.h
- auxprogs/homGeneMapping/README.TXT
- auxprogs/homGeneMapping/include/bitmasking.hh
- auxprogs/homGeneMapping/include/gene.hh
- auxprogs/homGeneMapping/include/genome.hh
- auxprogs/homGeneMapping/include/projectio.hh
- auxprogs/homGeneMapping/include/sqliteDB.hh
- auxprogs/homGeneMapping/src/Makefile
- auxprogs/homGeneMapping/src/gene.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/compare/a8b81349bcd281ee3549d6da395accaa4df29d83...3fc379ff4a790d62c1a3f663951539ab3baaf821

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View it on GitLab: https://salsa.debian.org/med-team/augustus/compare/a8b81349bcd281ee3549d6da395accaa4df29d83...3fc379ff4a790d62c1a3f663951539ab3baaf821
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