[med-svn] [Git][med-team/augustus][upstream] New upstream version 3.3.3+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / augustus


Commits:
3edf606c by Sascha Steinbiss at 2019-09-18T20:53:25Z
New upstream version 3.3.3+dfsg
- - - - -


30 changed files:

- .gitignore
- .travis.yml
- Dockerfile
- + Dockerfile-cgp-file
- + Dockerfile-cgp-mysql
- + Dockerfile-cgp-sqlite
- HISTORY.TXT
- Makefile
- + README-cgp.md
- − README-cgp.txt
- README.md
- auxprogs/bam2hints/Makefile
- auxprogs/bam2hints/bam2hints.cc
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.txt
- auxprogs/bam2wig/bam2wig.c
- auxprogs/filterBam/src/filterBam.cc
- auxprogs/filterBam/src/functions/MatePairs.cc
- auxprogs/filterBam/src/functions/PairednessCoverage.cc
- auxprogs/filterBam/src/functions/SingleAlignment.cc
- auxprogs/filterBam/src/functions/initOptions.cc
- auxprogs/filterBam/src/headers/filterBam.h
- auxprogs/homGeneMapping/README.TXT
- auxprogs/homGeneMapping/include/bitmasking.hh
- auxprogs/homGeneMapping/include/gene.hh
- auxprogs/homGeneMapping/include/genome.hh
- auxprogs/homGeneMapping/include/projectio.hh
- auxprogs/homGeneMapping/include/sqliteDB.hh
- auxprogs/homGeneMapping/src/Makefile
- auxprogs/homGeneMapping/src/gene.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/commit/3edf606c6e109eb22e19da6ced3ae3c772ec6ff1

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