[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Thu Apr 2 14:44:35 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
86d16c42 by Andreas Tille at 2020-04-02T13:44:30+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,53 @@
-Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
+Last-Update: Thu, 02 Apr 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    166 | {covid-19,imaging}                                  | 
- orthanc                       |     95 | {covid-19,practice,imaging}                         | 
- gdcm                          |     45 | {imaging-dev}                                       | 
+ dcmtk                         |    164 | {covid-19,imaging}                                  | 
+ orthanc                       |     94 | {covid-19,practice,imaging}                         | 
+ gdcm                          |     47 | {imaging-dev}                                       | 
  orthanc-wsi                   |     40 | {practice,covid-19,laboratory,his,oncology,imaging} | 
  htsjdk                        |     32 | {bio-dev}                                           | 
- amide                         |     30 | {imaging}                                           | 
- dcm2niix                      |     27 | {imaging}                                           | 
- dicomscope                    |     24 | {imaging}                                           | 
- dicom3tools                   |     23 | {imaging}                                           | 
- gdcm                          |     19 | {covid-19,imaging}                                  | 
+ amide                         |     29 | {imaging}                                           | 
+ dcm2niix                      |     29 | {imaging}                                           | 
+ dicomscope                    |     26 | {imaging}                                           | 
+ dicom3tools                   |     24 | {imaging}                                           | 
+ gdcm                          |     20 | {covid-19,imaging}                                  | 
  gnumed-server                 |     18 | {practice,covid-19}                                 | 
+ ngs-sdk                       |     18 | {bio-dev}                                           | 
  minc-tools                    |     17 | {imaging}                                           | 
- ngs-sdk                       |     17 | {bio-dev}                                           | 
  pixelmed                      |     16 | {imaging}                                           | 
  ncbi-entrez-direct            |     14 | {bio}                                               | 
  openslide                     |     14 | {imaging}                                           | 
+ vtk-dicom                     |     14 | {imaging}                                           | 
  biojava-live                  |     13 | {bio-dev}                                           | 
  insighttoolkit4               |     13 | {imaging-dev}                                       | 
  invesalius                    |     13 | {imaging}                                           | 
  king                          |     13 | {typesetting,imaging}                               | 
- vtk-dicom                     |     13 | {imaging}                                           | 
  mia                           |     12 | {imaging}                                           | 
  cgview                        |     11 | {bio}                                               | 
- ea-utils                      |     11 | {bio}                                               | 
  psychopy                      |     11 | {psychology}                                        | 
  adun.app                      |     10 | {bio}                                               | 
  diamond-aligner               |     10 | {covid-19,bio}                                      | 
+ ea-utils                      |     10 | {bio}                                               | 
  jebl2                         |     10 | {bio-dev}                                           | 
- king-probe                    |     10 | {bio}                                               | 
- ngs-sdk                       |     10 | {bio-dev}                                           | 
+ plastimatch                   |     10 | {imaging}                                           | 
  radiant                       |     10 | {bio}                                               | 
  staden                        |     10 | {bio}                                               | 
  dazzdb                        |      9 | {bio}                                               | 
+ king-probe                    |      9 | {bio}                                               | 
+ ngs-sdk                       |      9 | {bio-dev}                                           | 
  obitools                      |      9 | {bio}                                               | 
- plastimatch                   |      9 | {imaging}                                           | 
- pscan-tfbs                    |      9 | {bio}                                               | 
  tree-puzzle                   |      9 | {bio-phylogeny,cloud,bio}                           | 
  biosig4c++                    |      8 | {imaging,physics}                                   | 
  bppsuite                      |      8 | {bio}                                               | 
  fastlink                      |      8 | {cloud,bio}                                         | 
- gdcm                          |      8 | {imaging-dev}                                       | 
  hunspell-en-med               |      8 | {tools}                                             | 
  librg-utils-perl              |      8 | {bio}                                               | 
  mipe                          |      8 | {cloud,bio}                                         | 
  norsp                         |      8 | {bio}                                               | 
  phast                         |      8 | {bio}                                               | 
  prime-phylo                   |      8 | {cloud,bio}                                         | 
+ pscan-tfbs                    |      8 | {bio}                                               | 
  seqsero                       |      8 | {bio}                                               | 
  sigma-align                   |      8 | {bio,cloud,bio-phylogeny}                           | 
  abacas                        |      7 | {bio}                                               | 
@@ -63,12 +62,11 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  fitgcp                        |      7 | {cloud,bio}                                         | 
  freecontact                   |      7 | {bio,cloud}                                         | 
  gasic                         |      7 | {cloud,bio}                                         | 
+ gdcm                          |      7 | {imaging-dev}                                       | 
  jaligner                      |      7 | {bio}                                               | 
  maqview                       |      7 | {bio}                                               | 
  melting                       |      7 | {bio,cloud}                                         | 
  ncbi-seg                      |      7 | {bio}                                               | 
- neobio                        |      7 | {bio,cloud}                                         | 
- paml                          |      7 | {bio}                                               | 
  phyutility                    |      7 | {cloud,bio}                                         | 
  piler                         |      7 | {bio}                                               | 
  saint                         |      7 | {bio}                                               | 
@@ -82,12 +80,13 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  freebayes                     |      6 | {bio}                                               | 
  lagan                         |      6 | {bio}                                               | 
  lamarc                        |      6 | {bio}                                               | 
- logol                         |      6 | {bio}                                               | 
  lucy                          |      6 | {bio}                                               | 
  microbegps                    |      6 | {bio}                                               | 
  mlv-smile                     |      6 | {cloud,bio}                                         | 
+ neobio                        |      6 | {bio,cloud}                                         | 
  openslide                     |      6 | {imaging-dev}                                       | 
  orthanc-webviewer             |      6 | {imaging}                                           | 
+ paml                          |      6 | {bio}                                               | 
  paraclu                       |      6 | {cloud,bio}                                         | 
  perm                          |      6 | {bio,cloud}                                         | 
  placnet                       |      6 | {bio}                                               | 
@@ -129,6 +128,7 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  libdivsufsort                 |      5 | {bio-dev}                                           | 
  libminc                       |      5 | {imaging-dev}                                       | 
  librdp-taxonomy-tree-java     |      5 | {bio-dev}                                           | 
+ logol                         |      5 | {bio}                                               | 
  mapsembler2                   |      5 | {bio,cloud}                                         | 
  mauve-aligner                 |      5 | {bio}                                               | 
  murasaki                      |      5 | {bio}                                               | 
@@ -179,6 +179,7 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  dindel                        |      3 | {bio}                                               | 
  fsm-lite                      |      3 | {bio}                                               | 
  metaphlan2                    |      3 | {bio}                                               | 
+ ngs-sdk                       |      3 | {bio-dev}                                           | 
  orthanc-dicomweb              |      3 | {covid-19,imaging}                                  | 
  orthanc-mysql                 |      3 | {imaging}                                           | 
  pbdagcon                      |      3 | {bio}                                               | 
@@ -209,7 +210,6 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  libgff                        |      2 | {bio-dev}                                           | 
  libsmithwaterman              |      2 | {bio}                                               | 
  mencal                        |      2 | {tools}                                             | 
- ngs-sdk                       |      2 | {bio-dev}                                           | 
  nutsqlite                     |      2 | {tools}                                             | 
  qcumber                       |      2 | {bio}                                               | 
  samtools-legacy               |      2 | {bio-dev}                                           | 
@@ -301,8 +301,8 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  python-py2bit                 |      0 | {bio,bio-dev}                                       | 
  python-questplus              |      0 | {covid-19}                                          | 
  python-scitrack               |      0 | {covid-19}                                          | 
- relion                        |      0 | {bio}                                               | 
  relion                        |      0 | {bio-dev}                                           | 
+ relion                        |      0 | {bio}                                               | 
  sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
  seqan                         |      0 | {bio-dev}                                           | 
@@ -316,5 +316,6 @@ Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
  trim-galore                   |      0 | {bio}                                               | 
  varna                         |      0 | {bio}                                               | 
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
-(344 rows)
+ relion                        |     -1 | {bio}                                               | 
+(345 rows)
 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,73 +1,73 @@
-Last-Update: Thu, 02 Apr 2020 01:42:03 +0000
+Last-Update: Thu, 02 Apr 2020 13:42:04 +0000
 
- source                        |             version             |        upstream_version         |                     uploaders                                           | Last uploader        |     Last uploaded      
--------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
- augur                         | 6.4.2                           | 6.4.3                           | Andreas Tille                                                           | Andreas Tille        | 2020-03-25 07:34:13+00
- baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                          | Andreas Tille        | 2018-09-24 13:04:18+00
- beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2019-07-31 13:08:02+00
- biobambam2                    | 2.0.160                         | 2.0.162+ds                      | Andreas Tille                                                           | Andreas Tille        | 2020-03-27 10:34:45+00
- biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                          | Olivier Sallou       | 2019-11-12 11:20:38+00
- biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-03-02 08:38:37+00
- bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                                    | Michael R. Crusoe    | 2019-12-19 16:34:16+00
- charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-01-10 20:10:56+00
- cwltool                       | 2.0.20200224214940              | 3.0.20200324120055              | Michael R. Crusoe                                                       | Michael R. Crusoe    | 2020-02-26 12:07:54+00
- cyvcf2                        | 0.11.6                          | 0.11.7                          | Liubov Chuprikova,Steffen Moeller                                       | Andreas Tille        | 2020-03-30 09:03:56+00
- daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                                           | Andreas Tille        | 2020-01-28 10:34:12+00
- dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                                           | Andreas Tille        | 2020-01-23 16:34:35+00
- discosnp                      | 2.4.3                           | 4.4.4                           | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2020-01-27 15:19:13+00
- ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2018-04-26 21:48:01+00
- falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                                          | Afif Elghraoui       | 2017-12-16 08:49:13+00
- fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                 | Amul Shah            | 2019-02-28 14:12:19+00
- gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200330.e99c5d7       | Andreas Tille,Nadiya Sitdykova                                          | Michael R. Crusoe    | 2020-02-17 14:52:30+00
- gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman                      | Steffen Moeller      | 2019-12-30 12:37:15+00
- hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                      | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
- htseq                         | 0.11.3                          | 0.11.4                          | Andreas Tille,Diane Trout                                               | Diane Trout          | 2020-03-04 07:04:25+00
- igdiscover                    | 0.11                            | 0.12.3                          | Steffen Moeller                                                         | Andreas Tille        | 2019-09-06 07:04:02+00
- igv                           | 2.4.17                          | 2.8.2                           | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2019-01-30 15:11:57+00
- imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                               | Andreas Tille        | 2019-12-04 14:55:11+00
- ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                | Andreas Tille        | 2019-01-26 07:49:20+00
- jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                           | Andreas Tille        | 2018-07-05 12:05:57+00
- kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20200325.3558942       | Andreas Tille                                                           | Andreas Tille        | 2019-02-14 13:26:09+00
- king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                            | Andreas Tille        | 2018-07-16 07:34:48+00
- kma                           | 1.2.21                          | 1.2.22                          | Andreas Tille                                                           | Steffen Moeller      | 2020-01-17 22:54:10+00
- libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200330.cb91494         | Andreas Tille                                                           | Andreas Tille        | 2018-05-25 21:49:43+00
- libmaus2                      | 2.0.713                         | 2.0.714                         | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2020-03-27 09:34:39+00
- libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                  | Andreas Tille        | 2018-09-26 08:35:30+00
- libthread-pool                | 2.0.1                           | 2.0.2                           | Andreas Tille                                                           | Andreas Tille        | 2019-11-19 21:21:23+00
- metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                           | Andreas Tille        | 2019-11-08 07:19:11+00
- mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                            | Andreas Tille        | 2018-06-11 07:19:31+00
- ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                              | Aaron M. Ucko        | 2020-02-17 01:50:53+00
- ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                                           | Aaron M. Ucko        | 2020-02-03 03:53:53+00
- nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-03-03 14:58:34+00
- pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                           | Andreas Tille        | 2020-01-29 08:51:15+00
- pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                           | Liubov Chuprikova    | 2019-04-07 15:33:36+00
- plink2                        | 2.00~a3-200217                  | 200328                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2020-02-19 06:19:18+00
- proteinortho                  | 6.0.14                          | 6.0.15                          | Andreas Tille                                                           | Michael R. Crusoe    | 2020-02-17 14:53:34+00
- pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-01-23 12:34:53+00
- pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-03-20 11:00:12+00
- python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                                      | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
- python-cobra                  | 0.14.2                          | 0.18.0                          | Afif Elghraoui                                                          | Liubov Chuprikova    | 2019-03-02 06:49:44+00
- python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                           | Andreas Tille        | 2019-12-06 16:51:43+00
- python-cutadapt               | 2.8                             | 2.9                             | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller               | Steffen Moeller      | 2020-02-03 10:50:38+00
- python-pbcore                 | 1.7.1+git20200313.41ba394       | 1.7.1+git20200326.ea0808a       | Andreas Tille                                                           | Steffen Moeller      | 2020-03-21 19:39:08+00
- python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                       | Michael R. Crusoe    | 2020-02-27 19:19:53+00
- python-skbio                  | 0.5.5                           | 0.5.6                           | Andreas Tille,Kevin Murray,Tim Booth                                    | Michael R. Crusoe    | 2020-02-28 14:48:20+00
- q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2020-01-26 07:34:32+00
- q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2019-11-14 22:00:17+00
- resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200318.d6f36d3         | Andreas Tille                                                           | Andreas Tille        | 2019-11-16 23:00:12+00
- scrm                          | 1.7.3                           | 1.7.4                           | Kevin Murray                                                            | Andreas Tille        | 2018-12-17 13:05:34+00
- seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                                            | Andreas Tille        | 2018-05-09 13:43:40+00
- skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-08-20 14:49:33+00
- spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille        | 2019-11-22 10:05:04+00
- sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                            | Steffen Moeller      | 2018-10-23 20:40:02+00
- stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                                 | Steffen Moeller      | 2020-03-26 02:50:13+00
- sumaclust                     | 1.0.34                          | 1.0.35                          | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2020-04-01 13:18:58+00
- sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2018-10-16 10:06:33+00
- t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2019-02-15 07:57:10+00
- umis                          | 1.0.6                           | 1.0.7                           | Andreas Tille                                                           | Andreas Tille        | 2020-01-27 07:34:12+00
- unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                                            | Adrian Bunk          | 2019-02-06 07:34:42+00
- vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2019-12-17 10:07:09+00
- xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                  | Andreas Tille        | 2019-01-25 18:23:59+00
+ source                        |             version             |        upstream_version         |              uploaders                                    | Last uploader        |     Last uploaded      
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------+----------------------+------------------------
+ atropos                       | 1.1.24                          | 2.0.0-alpha.4                   | Andreas Tille                                             | Steffen Moeller      | 2019-11-30 12:19:31+00
+ baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                            | Andreas Tille        | 2018-09-24 13:04:18+00
+ beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                              | Andreas Tille        | 2019-07-31 13:08:02+00
+ biobambam2                    | 2.0.160                         | 2.0.162+ds                      | Andreas Tille                                             | Andreas Tille        | 2020-03-27 10:34:45+00
+ biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                            | Olivier Sallou       | 2019-11-12 11:20:38+00
+ biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                          | Andreas Tille        | 2020-03-02 08:38:37+00
+ bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                      | Michael R. Crusoe    | 2019-12-19 16:34:16+00
+ charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                             | Andreas Tille        | 2019-01-10 20:10:56+00
+ cwltool                       | 2.0.20200224214940              | 3.0.20200324120055              | Michael R. Crusoe                                         | Michael R. Crusoe    | 2020-02-26 12:07:54+00
+ cyvcf2                        | 0.11.6                          | 0.11.7                          | Liubov Chuprikova,Steffen Moeller                         | Andreas Tille        | 2020-03-30 09:03:56+00
+ daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                             | Andreas Tille        | 2020-01-28 10:34:12+00
+ dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                             | Andreas Tille        | 2020-01-23 16:34:35+00
+ discosnp                      | 2.4.3                           | 4.4.4                           | Andreas Tille,Olivier Sallou                              | Andreas Tille        | 2020-01-27 15:19:13+00
+ ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                   | Andreas Tille        | 2018-04-26 21:48:01+00
+ falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                            | Afif Elghraoui       | 2017-12-16 08:49:13+00
+ fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                   | Amul Shah            | 2019-02-28 14:12:19+00
+ gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200330.e99c5d7       | Andreas Tille,Nadiya Sitdykova                            | Michael R. Crusoe    | 2020-02-17 14:52:30+00
+ gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman        | Steffen Moeller      | 2019-12-30 12:37:15+00
+ hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                        | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
+ htseq                         | 0.11.3                          | 0.11.4                          | Andreas Tille,Diane Trout                                 | Diane Trout          | 2020-03-04 07:04:25+00
+ igdiscover                    | 0.11                            | 0.12.3                          | Steffen Moeller                                           | Andreas Tille        | 2019-09-06 07:04:02+00
+ igv                           | 2.4.17                          | 2.8.2                           | Andreas Tille,Olivier Sallou                              | Andreas Tille        | 2019-01-30 15:11:57+00
+ imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                 | Andreas Tille        | 2019-12-04 14:55:11+00
+ ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                  | Andreas Tille        | 2019-01-26 07:49:20+00
+ jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                             | Andreas Tille        | 2018-07-05 12:05:57+00
+ kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20200325.3558942       | Andreas Tille                                             | Andreas Tille        | 2019-02-14 13:26:09+00
+ king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant              | Andreas Tille        | 2018-07-16 07:34:48+00
+ kma                           | 1.2.21                          | 1.2.22                          | Andreas Tille                                             | Steffen Moeller      | 2020-01-17 22:54:10+00
+ libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200330.cb91494         | Andreas Tille                                             | Andreas Tille        | 2018-05-25 21:49:43+00
+ libmaus2                      | 2.0.713                         | 2.0.714                         | Andreas Tille,Steffen Moeller                             | Andreas Tille        | 2020-03-27 09:34:39+00
+ libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                    | Andreas Tille        | 2018-09-26 08:35:30+00
+ libthread-pool                | 2.0.1                           | 2.0.2                           | Andreas Tille                                             | Andreas Tille        | 2019-11-19 21:21:23+00
+ metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                             | Andreas Tille        | 2019-11-08 07:19:11+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller              | Andreas Tille        | 2018-06-11 07:19:31+00
+ ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                | Aaron M. Ucko        | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                             | Aaron M. Ucko        | 2020-02-03 03:53:53+00
+ nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                          | Andreas Tille        | 2020-03-03 14:58:34+00
+ pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                             | Liubov Chuprikova    | 2019-04-07 15:33:36+00
+ plink2                        | 2.00~a3-200217                  | 200328                          | Dylan Aïssi                                              | Dylan Aïssi         | 2020-02-19 06:19:18+00
+ proteinortho                  | 6.0.14                          | 6.0.15                          | Andreas Tille                                             | Michael R. Crusoe    | 2020-02-17 14:53:34+00
+ pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                          | Andreas Tille        | 2020-01-23 12:34:53+00
+ pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                          | Andreas Tille        | 2020-03-20 11:00:12+00
+ python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                        | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
+ python-cgecore                | 1.5.3                           | 1.5.4                           | Andreas Tille                                             | Steffen Moeller      | 2020-03-17 12:49:52+00
+ python-cobra                  | 0.14.2                          | 0.18.0                          | Afif Elghraoui                                            | Liubov Chuprikova    | 2019-03-02 06:49:44+00
+ python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                             | Andreas Tille        | 2019-12-06 16:51:43+00
+ python-cutadapt               | 2.8                             | 2.9                             | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller      | 2020-02-03 10:50:38+00
+ python-pbcore                 | 1.7.1+git20200313.41ba394       | 1.7.1+git20200326.ea0808a       | Andreas Tille                                             | Steffen Moeller      | 2020-03-21 19:39:08+00
+ python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                         | Michael R. Crusoe    | 2020-02-27 19:19:53+00
+ python-skbio                  | 0.5.5                           | 0.5.6                           | Andreas Tille,Kevin Murray,Tim Booth                      | Michael R. Crusoe    | 2020-02-28 14:48:20+00
+ q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                         | Liubov Chuprikova    | 2020-01-26 07:34:32+00
+ q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                         | Liubov Chuprikova    | 2019-11-14 22:00:17+00
+ qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller           | Liubov Chuprikova    | 2019-12-16 09:51:27+00
+ resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200318.d6f36d3         | Andreas Tille                                             | Andreas Tille        | 2019-11-16 23:00:12+00
+ scrm                          | 1.7.3                           | 1.7.4                           | Kevin Murray                                              | Andreas Tille        | 2018-12-17 13:05:34+00
+ seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                              | Andreas Tille        | 2018-05-09 13:43:40+00
+ skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                             | Andreas Tille        | 2019-08-20 14:49:33+00
+ sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                              | Steffen Moeller      | 2018-10-23 20:40:02+00
+ stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                   | Steffen Moeller      | 2020-03-26 02:50:13+00
+ sumaclust                     | 1.0.34                          | 1.0.35                          | Andreas Tille,Tim Booth                                   | Andreas Tille        | 2020-04-01 13:18:58+00
+ sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                   | Andreas Tille        | 2018-10-16 10:06:33+00
+ t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                             | Andreas Tille        | 2019-02-15 07:57:10+00
+ umis                          | 1.0.6                           | 1.0.7                           | Andreas Tille                                             | Andreas Tille        | 2020-01-27 07:34:12+00
+ unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                              | Adrian Bunk          | 2019-02-06 07:34:42+00
+ vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                   | Andreas Tille        | 2019-12-17 10:07:09+00
+ xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                    | Andreas Tille        | 2019-01-25 18:23:59+00
 (66 rows)
 
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/86d16c42c9ba5b571d6ad30b5606e2386c6ba8d6

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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/86d16c42c9ba5b571d6ad30b5606e2386c6ba8d6
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