[med-svn] [Git][med-team/proteinortho][master] tweak patch

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / proteinortho


Commits:
b85c2b5b by Michael R. Crusoe at 2020-04-04T11:36:44+02:00
tweak patch

- - - - -


1 changed file:

- debian/patches/deb_diamond


Changes:

=====================================
debian/patches/deb_diamond
=====================================
@@ -2,7 +2,7 @@ Author: Michael R. Crusoe <michael.crusoe at gmail.com>
 Description: Find some Debian packaged software under their original names
 --- proteinortho.orig/proteinortho6.pl
 +++ proteinortho/proteinortho6.pl
-@@ -535,6 +535,9 @@
+@@ -548,6 +548,9 @@
    $NC="";
  }
  
@@ -23,3 +23,12 @@ Description: Find some Debian packaged software under their original names
  		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
  	else \
  		./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \
+@@ -274,7 +274,7 @@
+ 	fi
+ 
+ 	@echo -n " [4/12] -p=diamond (--moresensitive) test (subparaBlast): "
+-	@if [ "$(shell which diamond)" = "" ]; then\
++	@if [ "$(shell which diamond-aligner)" = "" ]; then\
+ 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
+ 	else \
+ 		./proteinortho6.pl -silent -force -project=test_diamondmoresensitive -p=diamond -subparaBlast="--more-sensitive" test/*.faa; \



View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec

-- 
View it on GitLab: https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200404/d03fac53/attachment.html>