[med-svn] [Git][med-team/toil][master] 12 commits: New upstream version 4.0.0

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
9479b327 by Michael R. Crusoe at 2020-04-06T09:10:51+02:00
New upstream version 4.0.0
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dbf79424 by Michael R. Crusoe at 2020-04-06T09:10:51+02:00
routine-update: New upstream version

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e7e3ab9b by Michael R. Crusoe at 2020-04-06T09:10:57+02:00
Update upstream source from tag 'upstream/4.0.0'

Update to upstream version '4.0.0'
with Debian dir 62eef3c55b39c70030912ed9b4ffa428424e0b44
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909da6a1 by Michael R. Crusoe at 2020-04-06T09:23:33+02:00
Freshen our patches

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461eb84f by Michael R. Crusoe at 2020-04-06T09:23:33+02:00
routine-update: Add salsa-ci file

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06dbcf97 by Michael R. Crusoe at 2020-04-06T09:23:33+02:00
routine-update: Rules-Requires-Root: no

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9f4bba3a by Michael R. Crusoe at 2020-04-06T09:23:34+02:00
debian/copyright: use spaces rather than tabs to start continuation lines..

Fixes: lintian: tab-in-license-text
See-also: https://lintian.debian.org/tags/tab-in-license-text.html

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059b3d75 by Michael R. Crusoe at 2020-04-06T09:23:34+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit.
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567a40d6 by Michael R. Crusoe at 2020-04-06T09:23:34+02:00
don't modify the upstream tarball

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1cf310a3 by Michael R. Crusoe at 2020-04-06T10:18:35+02:00
Set upstream metadata fields: Repository, Repository-Browse

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0b6ca850 by Michael R. Crusoe at 2020-04-06T13:49:38+02:00
python3-chardet is no longer needed

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46d27b7b by Michael R. Crusoe at 2020-04-06T13:57:06+02:00
release 4.0.0-1 to unstable

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30 changed files:

- .gitignore
- .gitlab-ci.yml
- .travis.yml
- Makefile
- README.rst
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/debianize_docs
- debian/patches/no_galaxy_lib
- debian/patches/remove-pathlib2-dep
- − debian/patches/schema_salad
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/soften-mesos-deps
- debian/patches/version.patch
- + debian/salsa-ci.yml
- debian/upstream/metadata
- docker/Dockerfile.py
- docs/gettingStarted/quickStart.rst
- docs/running/cloud/amazon.rst
- docs/vendor/sphinxcontrib/fulltoc.py
- setup.py
- src/toil/__init__.py
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/abstractGridEngineBatchSystem.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/lsfHelper.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/3a045338ac6cdd1d6667cbd5685243bd496cdc5d...46d27b7b1c0020db4180d6ae9eeccb4186258c86

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/3a045338ac6cdd1d6667cbd5685243bd496cdc5d...46d27b7b1c0020db4180d6ae9eeccb4186258c86
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