Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f86c6e7c by Andreas Tille at 2020-04-08T13:45:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,261 +1,260 @@
-Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 08 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 164 | {imaging,covid-19} |
- orthanc | 93 | {practice,imaging,covid-19} |
- gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 39 | {practice,his,laboratory,imaging,oncology,covid-19} |
+ dcmtk | 167 | {imaging,covid-19} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ gdcm | 44 | {imaging-dev} |
+ orthanc-wsi | 40 | {practice,imaging,oncology,laboratory,covid-19,his} |
amide | 30 | {imaging} |
- htsjdk | 30 | {bio-dev} |
+ htsjdk | 29 | {bio-dev} |
dcm2niix | 26 | {imaging} |
+ dicom3tools | 24 | {imaging} |
dicomscope | 24 | {imaging} |
- dicom3tools | 23 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
+ gdcm | 22 | {imaging,covid-19} |
gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 17 | {bio-dev} |
+ ngs-sdk | 18 | {bio-dev} |
minc-tools | 15 | {imaging} |
- ncbi-entrez-direct | 14 | {bio} |
- invesalius | 13 | {imaging} |
- king | 13 | {typesetting,imaging} |
+ ncbi-entrez-direct | 13 | {bio} |
adun.app | 12 | {bio} |
- pixelmed | 12 | {imaging} |
+ invesalius | 12 | {imaging} |
+ king | 12 | {imaging,typesetting} |
vtk-dicom | 12 | {imaging} |
- biojava-live | 11 | {bio-dev} |
- cgview | 11 | {bio} |
+ hunspell-en-med | 11 | {tools} |
insighttoolkit4 | 11 | {imaging-dev} |
- openslide | 11 | {imaging} |
+ pixelmed | 11 | {imaging} |
psychopy | 11 | {psychology} |
- staden | 11 | {bio} |
+ cgview | 10 | {bio} |
ea-utils | 10 | {bio} |
- gasic | 10 | {cloud,bio} |
- hunspell-en-med | 10 | {tools} |
- jebl2 | 10 | {bio-dev} |
- king-probe | 10 | {bio} |
mia | 10 | {imaging} |
- obitools | 10 | {bio} |
- dazzdb | 9 | {bio} |
+ ngs-sdk | 10 | {bio-dev} |
+ openslide | 10 | {imaging} |
+ staden | 10 | {bio} |
+ gasic | 9 | {bio,cloud} |
gdcm | 9 | {imaging-dev} |
- mipe | 9 | {bio,cloud} |
- ngs-sdk | 9 | {bio-dev} |
- paml | 9 | {bio} |
- arden | 8 | {bio,cloud} |
- biosig4c++ | 8 | {imaging,physics} |
- bppsuite | 8 | {bio} |
- fitgcp | 8 | {cloud,bio} |
- lagan | 8 | {bio} |
+ jebl2 | 9 | {bio-dev} |
+ king-probe | 9 | {bio} |
+ obitools | 9 | {bio} |
+ biojava-live | 8 | {bio-dev} |
+ biosig4c++ | 8 | {physics,imaging} |
+ dazzdb | 8 | {bio} |
+ mipe | 8 | {bio,cloud} |
+ paml | 8 | {bio} |
parsnp | 8 | {bio} |
- phast | 8 | {bio} |
plastimatch | 8 | {imaging} |
- radiant | 8 | {bio} |
- seqsero | 8 | {bio} |
- tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
- abacas | 7 | {bio} |
- alter-sequence-alignment | 7 | {bio} |
- anfo | 7 | {cloud,bio} |
+ arden | 7 | {cloud,bio} |
biomaj3-cli | 7 | {cloud} |
- daligner | 7 | {bio-ngs,bio} |
+ bppsuite | 7 | {bio} |
diamond-aligner | 7 | {bio,covid-19} |
- embassy-domainatrix | 7 | {bio,cloud} |
- fastlink | 7 | {bio,cloud} |
- freecontact | 7 | {bio,cloud} |
+ fitgcp | 7 | {bio,cloud} |
+ lagan | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
- ncbi-seg | 7 | {bio} |
- neobio | 7 | {cloud,bio} |
- norsp | 7 | {bio} |
- prime-phylo | 7 | {bio,cloud} |
- seqtools | 7 | {bio} |
- tracetuner | 7 | {bio} |
- ampliconnoise | 6 | {cloud,bio} |
- bandage | 6 | {bio} |
- beads | 6 | {bio} |
+ phast | 7 | {bio} |
+ radiant | 7 | {bio} |
+ salmon | 7 | {bio} |
+ tree-puzzle | 7 | {cloud,bio-phylogeny,bio} |
+ abacas | 6 | {bio} |
+ anfo | 6 | {cloud,bio} |
biomaj3-daemon | 6 | {bio} |
- bio-rainbow | 6 | {bio} |
- bitseq | 6 | {bio} |
cluster3 | 6 | {bio} |
- codonw | 6 | {bio} |
ecopcr | 6 | {bio} |
- edtsurf | 6 | {bio} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- estscan | 6 | {bio} |
- freebayes | 6 | {bio} |
- gatb-core | 6 | {bio} |
- ghmm | 6 | {bio} |
- jaligner | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
- maqview | 6 | {bio} |
- melting | 6 | {cloud,bio} |
+ embassy-domainatrix | 6 | {cloud,bio} |
+ fastlink | 6 | {cloud,bio} |
+ freecontact | 6 | {bio,cloud} |
+ ncbi-seg | 6 | {bio} |
+ neobio | 6 | {bio,cloud} |
+ norsp | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
- phyutility | 6 | {bio,cloud} |
piler | 6 | {bio} |
- placnet | 6 | {bio} |
- predictprotein | 6 | {bio} |
- pscan-chip | 6 | {bio} |
+ prime-phylo | 6 | {bio,cloud} |
pscan-tfbs | 6 | {bio} |
pymia | 6 | {imaging-dev} |
- rambo-k | 6 | {bio} |
- rdp-readseq | 6 | {bio} |
- salmon | 6 | {bio} |
+ seqsero | 6 | {bio} |
seqtools | 6 | {bio} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {cloud,bio-phylogeny,bio} |
- sumatra | 6 | {bio} |
- baitfisher | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
- brig | 5 | {bio} |
- centrifuge | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
+ tracetuner | 6 | {bio} |
+ alter-sequence-alignment | 5 | {bio} |
+ ampliconnoise | 5 | {bio,cloud} |
+ bandage | 5 | {bio} |
+ bio-rainbow | 5 | {bio} |
+ bitseq | 5 | {bio} |
clonalorigin | 5 | {bio} |
- dascrubber | 5 | {bio} |
- dwgsim | 5 | {bio} |
- elph | 5 | {bio} |
+ codonw | 5 | {bio} |
+ daligner | 5 | {bio-ngs,bio} |
+ edtsurf | 5 | {bio} |
+ embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
+ estscan | 5 | {bio} |
fastml | 5 | {bio} |
+ freebayes | 5 | {bio} |
+ gatb-core | 5 | {bio} |
+ ghmm | 5 | {bio} |
harvest-tools | 5 | {bio} |
- hinge | 5 | {bio} |
indelible | 5 | {bio} |
- ipig | 5 | {bio} |
- lamarc | 5 | {bio} |
+ jaligner | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
- lucy | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
- mauve-aligner | 5 | {bio} |
- microbegps | 5 | {bio} |
- mlv-smile | 5 | {cloud,bio} |
- paraclu | 5 | {bio,cloud} |
- perm | 5 | {bio,cloud} |
- poretools | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
- probabel | 5 | {cloud,bio} |
- quorum | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
- repeatmasker-recon | 5 | {bio} |
- saint | 5 | {bio} |
+ maqview | 5 | {bio} |
+ melting | 5 | {cloud,bio} |
+ openslide | 5 | {imaging-dev} |
+ phyutility | 5 | {cloud,bio} |
+ placnet | 5 | {bio} |
+ predictprotein | 5 | {bio} |
+ pscan-chip | 5 | {bio} |
+ rambo-k | 5 | {bio} |
seer | 5 | {bio} |
seqtools | 5 | {bio} |
- sickle | 5 | {bio} |
- sprai | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
- squizz | 5 | {cloud,bio} |
- transtermhp | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ sibsim4 | 5 | {bio,cloud} |
+ sigma-align | 5 | {cloud,bio-phylogeny,bio} |
+ sumatra | 5 | {bio} |
vsearch | 5 | {bio} |
- assemblytics | 4 | {bio} |
+ baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
- beast2-mcmc | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
- blasr | 4 | {bio,bio-ngs} |
- canu | 4 | {bio} |
+ beads | 4 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ brig | 4 | {bio} |
+ centrifuge | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
+ dascrubber | 4 | {bio} |
delly | 4 | {bio,covid-19} |
dindel | 4 | {bio} |
+ dwgsim | 4 | {bio} |
+ elph | 4 | {bio} |
fsm-lite | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ hinge | 4 | {bio} |
+ ipig | 4 | {bio} |
+ lamarc | 4 | {bio} |
libncl | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- logol | 4 | {bio} |
+ mapsembler2 | 4 | {cloud,bio} |
mencal | 4 | {tools} |
- mhap | 4 | {bio,bio-ngs} |
+ microbegps | 4 | {bio} |
+ mlv-smile | 4 | {bio,cloud} |
mrs | 4 | {bio} |
murasaki | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
- patman | 4 | {bio} |
- pbdagcon | 4 | {bio} |
- prottest | 4 | {bio-phylogeny,bio} |
- rdp-classifier | 4 | {bio} |
+ paraclu | 4 | {cloud,bio} |
+ perm | 4 | {bio,cloud} |
+ poretools | 4 | {bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ probabel | 4 | {bio,cloud} |
+ quorum | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rdp-readseq | 4 | {bio} |
relion | 4 | {bio} |
- samblaster | 4 | {covid-19,bio} |
- scythe | 4 | {bio} |
- soapsnp | 4 | {bio} |
+ repeatmasker-recon | 4 | {bio} |
+ saint | 4 | {bio} |
+ sprai | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ squizz | 4 | {cloud,bio} |
+ transtermhp | 4 | {bio} |
+ treeview | 4 | {bio-phylogeny,bio} |
+ assemblytics | 3 | {bio} |
+ beast2-mcmc | 3 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
+ canu | 3 | {bio} |
dicompyler | 3 | {oncology} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
libminc | 3 | {imaging-dev} |
+ libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
+ logol | 3 | {bio} |
+ lucy | 3 | {bio} |
maffilter | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mptp | 3 | {bio} |
nutsqlite | 3 | {tools} |
- orthanc-dicomweb | 3 | {covid-19,imaging} |
+ orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
- phipack | 3 | {bio} |
- phybin | 3 | {bio} |
- pilon | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
- rampler | 3 | {bio} |
- relion | 3 | {bio} |
- roguenarok | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- runcircos-gui | 3 | {bio} |
+ patman | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
+ rdp-classifier | 3 | {bio} |
+ samblaster | 3 | {covid-19,bio} |
+ scythe | 3 | {bio} |
segemehl | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
+ sickle | 3 | {bio} |
+ soapsnp | 3 | {bio} |
stacks | 3 | {bio} |
- suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- sweed | 3 | {bio} |
- tnseq-transit | 3 | {bio,covid-19} |
transrate-tools | 3 | {bio} |
- tvc | 3 | {bio} |
- varscan | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
- cufflinks | 2 | {bio,cloud} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
+ cufflinks | 2 | {cloud,bio} |
elastix | 2 | {imaging} |
getdata | 2 | {bio} |
igor | 2 | {bio} |
- kma | 2 | {bio} |
- kmerresistance | 2 | {bio} |
libgff | 2 | {bio-dev} |
libsmithwaterman | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
ngs-sdk | 2 | {bio-dev} |
pal2nal | 2 | {bio} |
+ phipack | 2 | {bio} |
+ phybin | 2 | {bio} |
+ pilon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
qcumber | 2 | {bio} |
qrisk2 | 2 | {practice} |
+ rampler | 2 | {bio} |
+ relion | 2 | {bio} |
+ roguenarok | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ runcircos-gui | 2 | {bio} |
scrm | 2 | {bio} |
- skesa | 2 | {bio} |
+ seqmagick | 2 | {covid-19,bio} |
snap-aligner | 2 | {bio} |
+ soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
srf | 2 | {bio-dev} |
- thesias | 2 | {bio,covid-19} |
- velvetoptimiser | 2 | {bio} |
+ suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
+ sweed | 2 | {bio} |
+ thesias | 2 | {covid-19,bio} |
+ tnseq-transit | 2 | {covid-19,bio} |
+ tvc | 2 | {bio} |
+ varscan | 2 | {bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
atropos | 1 | {bio} |
- biosig4c++ | 1 | {physics,imaging-dev} |
+ biosig4c++ | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
+ kma | 1 | {bio} |
+ kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libsmithwaterman | 1 | {bio-dev} |
nanook | 1 | {bio} |
- opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
python-questplus | 1 | {covid-19} |
+ python-scitrack | 1 | {covid-19} |
samtools-legacy | 1 | {bio-dev} |
sift | 1 | {bio} |
+ skesa | 1 | {bio} |
stringtie | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
+ tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
+ velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {cloud,bio} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
- biobambam2 | 0 | {covid-19,bio,bio-dev} |
+ biobambam2 | 0 | {covid-19,bio-dev,bio} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
- fasta3 | 0 | {bio,covid-19} |
+ fasta3 | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -271,9 +270,9 @@ Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -290,26 +289,26 @@ Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
multiqc | 0 | {bio} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
+ opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {tools,data,practice} |
+ oscar | 0 | {data,practice,tools} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-py2bit | 0 | {bio-dev,bio} |
- python-scitrack | 0 | {covid-19} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
spaln | 0 | {bio,covid-19} |
trim-galore | 0 | {bio} |
@@ -317,5 +316,5 @@ Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {bio} |
wtdbg2 | -1 | {covid-19} |
-(345 rows)
+(344 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,68 +1,71 @@
-Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- bbmap | 38.79 | 38.80 | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00
- biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
- biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00
- daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
- dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
- discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200330.e99c5d7 | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
- igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
- kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200330.cb91494 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
- ncbi-vdb | 2.10.3 | 2.10.5 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
- picard-tools | 2.18.25 | 2.22.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
- python-bids-validator | 1.2.4 | 1.5.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
- python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
- q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
- spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
- sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
- stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(60 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
+ artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
+ atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ bbmap | 38.79 | 38.80 | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00
+ biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
+ biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
+ biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
+ biomaj3-core | 3.0.19 | 3.0.23 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
+ cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
+ dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200330.e99c5d7 | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
+ htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
+ igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200405.630f312 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
+ ncbi-vdb | 2.10.3 | 2.10.5 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
+ plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
+ python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
+ python-bids-validator | 1.2.4 | 1.5.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
+ python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
+ q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00
+ simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
+ skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
+ spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
+ spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
+ sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(63 rows)
source | id | severity | title
@@ -183,7 +186,6 @@ Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
openslide-python | 842150 | wishlist | RunningDeepZoomServerOnApache
opensurgsim | 912110 | important | opensurgsim FTBFS: test failures
opensurgsim | 914338 | normal | opensurgsim ftbfs with ld --as-needed
- orthanc | 829380 | wishlist | orthanc: please provide orthanc_upgrade script
orthanc-postgresql | 829383 | wishlist | orthanc-postgresql: please provide backup script
orthanc-webviewer | 828949 | minor | orthanc-webviewer: "better" suggestion for cache location
paleomix | 933750 | normal | paleomix: Port to Python3 needed
@@ -263,5 +265,5 @@ Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(196 rows)
+(195 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f86c6e7c24c60fc8ae0961cee6a997fa0ecfbb9f
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f86c6e7c24c60fc8ae0961cee6a997fa0ecfbb9f
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