[med-svn] [Git][med-team/trinityrnaseq][master] 9 commits: adapt to new naming format

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
3775625c by Michael R. Crusoe at 2020-04-08T17:27:33+02:00
adapt to new naming format

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8f27c705 by Michael R. Crusoe at 2020-04-08T17:27:35+02:00
New upstream version 2.8.6+dfsg
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b3e95494 by Michael R. Crusoe at 2020-04-08T17:27:36+02:00
new upstream release

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c9a63419 by Michael R. Crusoe at 2020-04-08T17:27:37+02:00
debhelper-compat 12

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9fb16f4c by Michael R. Crusoe at 2020-04-08T17:27:37+02:00
Standards-Version: 4.4.0

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c4e425d1 by Michael R. Crusoe at 2020-04-08T17:27:38+02:00
refresh patches

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6f794212 by Michael R. Crusoe at 2020-04-08T17:27:38+02:00
adjust to new build layout

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f4ddeb07 by Michael R. Crusoe at 2020-04-08T17:27:39+02:00
python3

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074e2939 by Michael R. Crusoe at 2020-04-08T17:27:39+02:00
TODO: autopkgtests fail: "there is no package called edgeR"

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22 changed files:

- + .gitignore
- + .travis.yml
- Analysis/DifferentialExpression/GOplot.Rscript
- Analysis/DifferentialExpression/PtR
- + Analysis/DifferentialExpression/add_annotations_to_GO_and_lengths_file.R
- Analysis/DifferentialExpression/analyze_diff_expr.pl
- Analysis/DifferentialExpression/prep_n_run_GOplot.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- + Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py
- Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
- Analysis/SuperTranscripts/pylib/Node_alignment.py
- Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
- Analysis/SuperTranscripts/pylib/TGraph.py
- Analysis/SuperTranscripts/pylib/TNode.py
- Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
- Butterfly/src/src/Path.java
- Butterfly/src/src/TransAssembly_allProbPaths.java
- Changelog.txt
- + Chrysalis/CMakeLists.txt
- − Chrysalis/GraphFromFasta_MPI.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e028b2a6a60ea8e3df0055dac543156fa4299f6e...074e293958abf910a626beef34f1938003cefcc6

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/e028b2a6a60ea8e3df0055dac543156fa4299f6e...074e293958abf910a626beef34f1938003cefcc6
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