[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sat Apr 11 14:44:29 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
9f5ad4d9 by Andreas Tille at 2020-04-11T13:44:23+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,28 +1,27 @@
-Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 11 Apr 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    177 | {imaging,covid-19}                                  | 
- orthanc                       |     97 | {covid-19,practice,imaging}                         | 
+ dcmtk                         |    176 | {covid-19,imaging}                                  | 
+ orthanc                       |     97 | {imaging,covid-19,practice}                         | 
  gdcm                          |     44 | {imaging-dev}                                       | 
- orthanc-wsi                   |     41 | {practice,laboratory,imaging,oncology,his,covid-19} | 
+ orthanc-wsi                   |     41 | {laboratory,imaging,his,practice,covid-19,oncology} | 
  amide                         |     30 | {imaging}                                           | 
  htsjdk                        |     30 | {bio-dev}                                           | 
- dcm2niix                      |     25 | {imaging}                                           | 
+ dcm2niix                      |     26 | {imaging}                                           | 
  dicom3tools                   |     24 | {imaging}                                           | 
- dicomscope                    |     23 | {imaging}                                           | 
- gdcm                          |     22 | {imaging,covid-19}                                  | 
- gnumed-server                 |     19 | {covid-19,practice}                                 | 
+ dicomscope                    |     24 | {imaging}                                           | 
+ gdcm                          |     21 | {imaging,covid-19}                                  | 
+ gnumed-server                 |     21 | {covid-19,practice}                                 | 
  ngs-sdk                       |     19 | {bio-dev}                                           | 
  minc-tools                    |     14 | {imaging}                                           | 
- ncbi-entrez-direct            |     14 | {bio}                                               | 
  adun.app                      |     13 | {bio}                                               | 
  hunspell-en-med               |     13 | {tools}                                             | 
+ ncbi-entrez-direct            |     13 | {bio}                                               | 
  invesalius                    |     12 | {imaging}                                           | 
  king                          |     12 | {imaging,typesetting}                               | 
  vtk-dicom                     |     12 | {imaging}                                           | 
  pixelmed                      |     11 | {imaging}                                           | 
- cgview                        |     10 | {bio}                                               | 
  ea-utils                      |     10 | {bio}                                               | 
  gasic                         |     10 | {cloud,bio}                                         | 
  insighttoolkit4               |     10 | {imaging-dev}                                       | 
@@ -30,62 +29,58 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  ngs-sdk                       |     10 | {bio-dev}                                           | 
  openslide                     |     10 | {imaging}                                           | 
  staden                        |     10 | {bio}                                               | 
- biosig4c++                    |      9 | {physics,imaging}                                   | 
+ biosig4c++                    |      9 | {imaging,physics}                                   | 
+ cgview                        |      9 | {bio}                                               | 
  gdcm                          |      9 | {imaging-dev}                                       | 
  jebl2                         |      9 | {bio-dev}                                           | 
  king-probe                    |      9 | {bio}                                               | 
- obitools                      |      9 | {bio}                                               | 
  psychopy                      |      9 | {psychology}                                        | 
  biojava-live                  |      8 | {bio-dev}                                           | 
- dazzdb                        |      8 | {bio}                                               | 
  librg-utils-perl              |      8 | {bio}                                               | 
- mipe                          |      8 | {bio,cloud}                                         | 
+ mipe                          |      8 | {cloud,bio}                                         | 
  paml                          |      8 | {bio}                                               | 
  parsnp                        |      8 | {bio}                                               | 
  plastimatch                   |      8 | {imaging}                                           | 
- arden                         |      7 | {cloud,bio}                                         | 
- biomaj3-cli                   |      7 | {cloud}                                             | 
- bppsuite                      |      7 | {bio}                                               | 
+ tree-puzzle                   |      8 | {cloud,bio,bio-phylogeny}                           | 
+ dazzdb                        |      7 | {bio}                                               | 
  diamond-aligner               |      7 | {bio,covid-19}                                      | 
  fitgcp                        |      7 | {cloud,bio}                                         | 
  lagan                         |      7 | {bio}                                               | 
- phast                         |      7 | {bio}                                               | 
- radiant                       |      7 | {bio}                                               | 
+ obitools                      |      7 | {bio}                                               | 
  salmon                        |      7 | {bio}                                               | 
- tree-puzzle                   |      7 | {bio,cloud,bio-phylogeny}                           | 
- abacas                        |      6 | {bio}                                               | 
  anfo                          |      6 | {bio,cloud}                                         | 
- biomaj3-daemon                |      6 | {bio}                                               | 
+ arden                         |      6 | {cloud,bio}                                         | 
+ biomaj3-cli                   |      6 | {cloud}                                             | 
+ bppsuite                      |      6 | {bio}                                               | 
  ecopcr                        |      6 | {bio}                                               | 
- embassy-domainatrix           |      6 | {bio,cloud}                                         | 
- fastlink                      |      6 | {cloud,bio}                                         | 
- freecontact                   |      6 | {bio,cloud}                                         | 
+ fastlink                      |      6 | {bio,cloud}                                         | 
  ncbi-seg                      |      6 | {bio}                                               | 
  neobio                        |      6 | {bio,cloud}                                         | 
  norsp                         |      6 | {bio}                                               | 
  orthanc-webviewer             |      6 | {imaging}                                           | 
+ phast                         |      6 | {bio}                                               | 
  piler                         |      6 | {bio}                                               | 
- prime-phylo                   |      6 | {cloud,bio}                                         | 
  pscan-tfbs                    |      6 | {bio}                                               | 
  pymia                         |      6 | {imaging-dev}                                       | 
+ radiant                       |      6 | {bio}                                               | 
  seqsero                       |      6 | {bio}                                               | 
- seqtools                      |      6 | {bio}                                               | 
- tracetuner                    |      6 | {bio}                                               | 
+ abacas                        |      5 | {bio}                                               | 
  alter-sequence-alignment      |      5 | {bio}                                               | 
  ampliconnoise                 |      5 | {cloud,bio}                                         | 
  bandage                       |      5 | {bio}                                               | 
+ biomaj3-daemon                |      5 | {bio}                                               | 
  bio-rainbow                   |      5 | {bio}                                               | 
- bitseq                        |      5 | {bio}                                               | 
  clonalorigin                  |      5 | {bio}                                               | 
- cluster3                      |      5 | {bio}                                               | 
  codonw                        |      5 | {bio}                                               | 
- daligner                      |      5 | {bio-ngs,bio}                                       | 
+ daligner                      |      5 | {bio,bio-ngs}                                       | 
  edtsurf                       |      5 | {bio}                                               | 
+ embassy-domainatrix           |      5 | {cloud,bio}                                         | 
  embassy-domalign              |      5 | {cloud,bio}                                         | 
  embassy-domsearch             |      5 | {bio,cloud}                                         | 
  estscan                       |      5 | {bio}                                               | 
  fastml                        |      5 | {bio}                                               | 
  freebayes                     |      5 | {bio}                                               | 
+ freecontact                   |      5 | {cloud,bio}                                         | 
  gatb-core                     |      5 | {bio}                                               | 
  ghmm                          |      5 | {bio}                                               | 
  harvest-tools                 |      5 | {bio}                                               | 
@@ -94,27 +89,31 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  jellyfish1                    |      5 | {bio}                                               | 
  libncl                        |      5 | {bio}                                               | 
  maqview                       |      5 | {bio}                                               | 
- melting                       |      5 | {cloud,bio}                                         | 
+ melting                       |      5 | {bio,cloud}                                         | 
  mrs                           |      5 | {bio}                                               | 
  phyutility                    |      5 | {bio,cloud}                                         | 
  placnet                       |      5 | {bio}                                               | 
  predictprotein                |      5 | {bio}                                               | 
+ prime-phylo                   |      5 | {cloud,bio}                                         | 
  pscan-chip                    |      5 | {bio}                                               | 
  rambo-k                       |      5 | {bio}                                               | 
  seer                          |      5 | {bio}                                               | 
  seqtools                      |      5 | {bio}                                               | 
- sibsim4                       |      5 | {cloud,bio}                                         | 
- sigma-align                   |      5 | {cloud,bio,bio-phylogeny}                           | 
+ sibsim4                       |      5 | {bio,cloud}                                         | 
+ sigma-align                   |      5 | {bio-phylogeny,bio,cloud}                           | 
  sumatra                       |      5 | {bio}                                               | 
+ tracetuner                    |      5 | {bio}                                               | 
  vsearch                       |      5 | {bio}                                               | 
  baitfisher                    |      4 | {bio}                                               | 
  bart-view                     |      4 | {imaging}                                           | 
  beads                         |      4 | {bio}                                               | 
- beast-mcmc                    |      4 | {bio-phylogeny,bio}                                 | 
+ beast-mcmc                    |      4 | {bio,bio-phylogeny}                                 | 
  bio-tradis                    |      4 | {bio,bio-dev}                                       | 
+ bitseq                        |      4 | {bio}                                               | 
  brig                          |      4 | {bio}                                               | 
  centrifuge                    |      4 | {bio}                                               | 
- clonalframeml                 |      4 | {covid-19,bio}                                      | 
+ clonalframeml                 |      4 | {bio,covid-19}                                      | 
+ cluster3                      |      4 | {bio}                                               | 
  dascrubber                    |      4 | {bio}                                               | 
  delly                         |      4 | {covid-19,bio}                                      | 
  dindel                        |      4 | {bio}                                               | 
@@ -125,7 +124,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  ipig                          |      4 | {bio}                                               | 
  lamarc                        |      4 | {bio}                                               | 
  libdivsufsort                 |      4 | {bio-dev}                                           | 
- mapsembler2                   |      4 | {bio,cloud}                                         | 
+ mapsembler2                   |      4 | {cloud,bio}                                         | 
  mencal                        |      4 | {tools}                                             | 
  microbegps                    |      4 | {bio}                                               | 
  mlv-smile                     |      4 | {bio,cloud}                                         | 
@@ -136,24 +135,21 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  poretools                     |      4 | {bio}                                               | 
  proalign                      |      4 | {bio,bio-phylogeny}                                 | 
  probabel                      |      4 | {bio,cloud}                                         | 
- quorum                        |      4 | {bio}                                               | 
  rdp-alignment                 |      4 | {bio}                                               | 
  rdp-readseq                   |      4 | {bio}                                               | 
  relion                        |      4 | {bio}                                               | 
  repeatmasker-recon            |      4 | {bio}                                               | 
- saint                         |      4 | {bio}                                               | 
  sprai                         |      4 | {bio}                                               | 
  spread-phy                    |      4 | {bio-phylogeny,bio}                                 | 
  squizz                        |      4 | {bio,cloud}                                         | 
  transtermhp                   |      4 | {bio}                                               | 
- treeview                      |      4 | {bio-phylogeny,bio}                                 | 
+ treeview                      |      4 | {bio,bio-phylogeny}                                 | 
  assemblytics                  |      3 | {bio}                                               | 
  beast2-mcmc                   |      3 | {bio}                                               | 
- blasr                         |      3 | {bio,bio-ngs}                                       | 
  canu                          |      3 | {bio}                                               | 
  cufflinks                     |      3 | {bio,cloud}                                         | 
  dicompyler                    |      3 | {oncology}                                          | 
- jmodeltest                    |      3 | {bio-phylogeny,bio}                                 | 
+ jmodeltest                    |      3 | {bio,bio-phylogeny}                                 | 
  libgff                        |      3 | {bio-dev}                                           | 
  libminc                       |      3 | {imaging-dev}                                       | 
  libpal-java                   |      3 | {bio-dev}                                           | 
@@ -170,17 +166,19 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  orthanc-mysql                 |      3 | {imaging}                                           | 
  patman                        |      3 | {bio}                                               | 
  pbdagcon                      |      3 | {bio}                                               | 
- prottest                      |      3 | {bio-phylogeny,bio}                                 | 
+ prottest                      |      3 | {bio,bio-phylogeny}                                 | 
+ quorum                        |      3 | {bio}                                               | 
  rdp-classifier                |      3 | {bio}                                               | 
- samblaster                    |      3 | {bio,covid-19}                                      | 
+ saint                         |      3 | {bio}                                               | 
+ samblaster                    |      3 | {covid-19,bio}                                      | 
  scythe                        |      3 | {bio}                                               | 
  segemehl                      |      3 | {bio}                                               | 
- sga                           |      3 | {bio}                                               | 
  sickle                        |      3 | {bio}                                               | 
  soapsnp                       |      3 | {bio}                                               | 
  stacks                        |      3 | {bio}                                               | 
  transrate-tools               |      3 | {bio}                                               | 
  biosig4c++                    |      2 | {imaging-dev,physics}                               | 
+ blasr                         |      2 | {bio-ngs,bio}                                       | 
  elastix                       |      2 | {imaging}                                           | 
  getdata                       |      2 | {bio}                                               | 
  igor                          |      2 | {bio}                                               | 
@@ -195,12 +193,12 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  qcumber                       |      2 | {bio}                                               | 
  qrisk2                        |      2 | {practice}                                          | 
  rampler                       |      2 | {bio}                                               | 
- relion                        |      2 | {bio}                                               | 
  roguenarok                    |      2 | {bio}                                               | 
- rtax                          |      2 | {bio,cloud}                                         | 
+ rtax                          |      2 | {cloud,bio}                                         | 
  runcircos-gui                 |      2 | {bio}                                               | 
  scrm                          |      2 | {bio}                                               | 
- seqmagick                     |      2 | {bio,covid-19}                                      | 
+ seqmagick                     |      2 | {covid-19,bio}                                      | 
+ sga                           |      2 | {bio}                                               | 
  snap-aligner                  |      2 | {bio}                                               | 
  soapaligner                   |      2 | {bio}                                               | 
  spaced                        |      2 | {bio}                                               | 
@@ -218,7 +216,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  biosig4c++                    |      1 | {physics,imaging-dev}                               | 
  blimps                        |      1 | {bio}                                               | 
  ctn                           |      1 | {imaging-dev}                                       | 
- embassy-phylip                |      1 | {bio,cloud}                                         | 
+ embassy-phylip                |      1 | {cloud,bio}                                         | 
  kma                           |      1 | {bio}                                               | 
  kmerresistance                |      1 | {bio}                                               | 
  libchado-perl                 |      1 | {bio-dev}                                           | 
@@ -229,8 +227,8 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  orthanc-postgresql            |      1 | {imaging}                                           | 
  papyrus                       |      1 | {imaging-dev}                                       | 
  pilercr                       |      1 | {bio}                                               | 
- python-questplus              |      1 | {covid-19}                                          | 
  python-scitrack               |      1 | {covid-19}                                          | 
+ relion                        |      1 | {bio}                                               | 
  samtools-legacy               |      1 | {bio-dev}                                           | 
  sift                          |      1 | {bio}                                               | 
  skesa                         |      1 | {bio}                                               | 
@@ -238,8 +236,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  trace2dbest                   |      1 | {bio}                                               | 
  tree-puzzle                   |      1 | {bio-phylogeny,bio,cloud}                           | 
  velvetoptimiser               |      1 | {bio}                                               | 
- volpack                       |      1 | {imaging-dev}                                       | 
- acedb                         |      0 | {cloud,bio}                                         | 
+ acedb                         |      0 | {bio,cloud}                                         | 
  augur                         |      0 | {bio,covid-19}                                      | 
  bambamc                       |      0 | {bio-dev}                                           | 
  bbmap                         |      0 | {covid-19}                                          | 
@@ -250,11 +247,11 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  camp                          |      0 | {imaging-dev}                                       | 
  emboss-explorer               |      0 | {bio}                                               | 
  emmax                         |      0 | {bio}                                               | 
- fasta3                        |      0 | {bio,covid-19}                                      | 
+ fasta3                        |      0 | {covid-19,bio}                                      | 
  fis-gtm                       |      0 | {his}                                               | 
  freecontact                   |      0 | {bio-dev}                                           | 
  gatb-core                     |      0 | {bio-dev}                                           | 
- htscodecs                     |      0 | {covid-19,bio-dev}                                  | 
+ htscodecs                     |      0 | {bio-dev,covid-19}                                  | 
  libbigwig                     |      0 | {bio-dev}                                           | 
  libbiod                       |      0 | {bio-dev}                                           | 
  libbio-mage-utils-perl        |      0 | {bio-dev}                                           | 
@@ -272,7 +269,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
  libics                        |      0 | {imaging-dev,covid-19}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
- libmaus2                      |      0 | {bio-dev,covid-19}                                  | 
+ libmaus2                      |      0 | {covid-19,bio-dev}                                  | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmialm                      |      0 | {imaging-dev}                                       | 
  libmuscle                     |      0 | {bio-dev}                                           | 
@@ -289,19 +286,19 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  metastudent-data-2            |      0 | {bio}                                               | 
  mia                           |      0 | {imaging-dev}                                       | 
  miaviewit                     |      0 | {imaging-dev}                                       | 
- milib                         |      0 | {bio-dev,covid-19}                                  | 
+ milib                         |      0 | {covid-19,bio-dev}                                  | 
  mssstest                      |      0 | {tools}                                             | 
  multiqc                       |      0 | {bio}                                               | 
  murasaki                      |      0 | {bio}                                               | 
  ncbi-vdb                      |      0 | {bio-dev}                                           | 
  opencfu                       |      0 | {laboratory}                                        | 
  orthanc-imagej                |      0 | {imaging}                                           | 
- oscar                         |      0 | {data,tools,practice}                               | 
+ oscar                         |      0 | {practice,data,tools}                               | 
  pbcopper                      |      0 | {bio-dev}                                           | 
  pbseqlib                      |      0 | {bio-dev}                                           | 
- python-py2bit                 |      0 | {bio,bio-dev}                                       | 
- relion                        |      0 | {bio}                                               | 
+ python-py2bit                 |      0 | {bio-dev,bio}                                       | 
  relion                        |      0 | {bio-dev}                                           | 
+ relion                        |      0 | {bio}                                               | 
  sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
  seqan                         |      0 | {bio-dev}                                           | 
@@ -310,12 +307,13 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  skewer                        |      0 | {bio}                                               | 
  smrtanalysis                  |      0 | {covid-19,bio}                                      | 
  solvate                       |      0 | {bio}                                               | 
- spaln                         |      0 | {covid-19,bio}                                      | 
+ spaln                         |      0 | {bio,covid-19}                                      | 
  trim-galore                   |      0 | {bio}                                               | 
  varna                         |      0 | {bio}                                               | 
+ volpack                       |      0 | {imaging-dev}                                       | 
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
  wtdbg2                        |      0 | {covid-19}                                          | 
  bustools                      |     -1 | {bio}                                               | 
  relion                        |     -1 | {bio}                                               | 
-(345 rows)
+(343 rows)
 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,10 +1,10 @@
-Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
+Last-Update: Sat, 11 Apr 2020 13:42:04 +0000
 
  source                        |             version             |        upstream_version         |                     uploaders                                           | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
  artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                           | Andreas Tille        | 2019-02-08 11:19:24+00
  baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                          | Andreas Tille        | 2018-09-24 13:04:18+00
- bbmap                         | 38.79                           | 38.80                           | Andreas Tille                                                           | Andreas Tille        | 2020-02-27 11:08:04+00
+ bbmap                         | 38.79                           | 38.81                           | Andreas Tille                                                           | Andreas Tille        | 2020-02-27 11:08:04+00
  biobambam2                    | 2.0.160                         | 2.0.162+ds                      | Andreas Tille                                                           | Andreas Tille        | 2020-03-27 10:34:45+00
  biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                            | Andreas Tille        | 2018-11-12 15:49:23+00
  biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                          | Olivier Sallou       | 2020-02-08 18:22:42+00
@@ -13,9 +13,9 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                          | Olivier Sallou       | 2019-11-12 11:20:38+00
  biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-03-02 08:38:37+00
  charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-01-10 20:10:56+00
- cyvcf2                        | 0.11.6                          | 0.11.7                          | Liubov Chuprikova,Steffen Moeller                                       | Andreas Tille        | 2020-03-30 09:03:56+00
  daligner                      | 1.0+git20200115.c2b47da         | 1.0+git20200322.477d5b9         | Andreas Tille                                                           | Andreas Tille        | 2020-01-28 10:34:12+00
  dazzdb                        | 1.0+git20200115.d8adde7         | 1.0+git20200322.ba88d76         | Andreas Tille                                                           | Andreas Tille        | 2020-01-23 16:34:35+00
+ fastp                         | 0.20.0                          | 0.20.1                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2019-07-22 13:49:23+00
  fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                 | Amul Shah            | 2019-02-28 14:12:19+00
  gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200330.e99c5d7       | Andreas Tille,Nadiya Sitdykova                                          | Michael R. Crusoe    | 2020-02-17 14:52:30+00
  hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                      | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
@@ -30,6 +30,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  kissplice                     | 2.4.0-p1                        | 2.5.0                           | Andreas Tille,David Parsons                                             | Saira Hussain        | 2019-08-14 21:04:51+00
  kma                           | 1.2.21                          | 1.2.22                          | Andreas Tille                                                           | Steffen Moeller      | 2020-01-17 22:54:10+00
  libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                           | Andreas Tille        | 2019-07-15 13:35:45+00
+ libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                           | Andreas Tille        | 2019-08-19 00:34:56+00
  libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                         | Michael R. Crusoe    | 2020-02-14 13:04:26+00
  libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200405.630f312         | Andreas Tille                                                           | Andreas Tille        | 2018-05-25 21:49:43+00
  libmaus2                      | 2.0.713                         | 2.0.715                         | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2020-03-27 09:34:39+00
@@ -39,7 +40,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  minia                         | 3.2.1+git20191130.5b131b9       | 3.2.1+git20200409.489e374       | Andreas Tille,Olivier Sallou                                            | Andreas Tille        | 2019-12-16 09:04:06+00
  ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                              | Aaron M. Ucko        | 2020-02-17 01:50:53+00
  ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                                           | Aaron M. Ucko        | 2020-02-03 03:53:53+00
- plink2                        | 2.00~a3-200217                  | 200328                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2020-02-19 06:19:18+00
+ plink2                        | 2.00~a3-200217                  | 200409                          | Dylan Aïssi                                                            | Dylan Aïssi         | 2020-02-19 06:19:18+00
  pybel                         | 0.14.5                          | 0.14.6                          | Steffen Moeller                                                         | Andreas Tille        | 2020-03-29 18:48:55+00
  pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                        | Andreas Tille        | 2020-04-03 16:34:56+00
  python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                          | Andreas Tille        | 2019-12-18 08:41:55+00
@@ -48,8 +49,12 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                           | Andreas Tille        | 2019-12-06 16:51:43+00
  python-pbcore                 | 1.7.1+git20200313.41ba394       | 1.7.1+git20200408.0579ac1       | Andreas Tille                                                           | Steffen Moeller      | 2020-03-21 19:39:08+00
  python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                          | Andreas Tille        | 2019-01-07 09:06:07+00
+ python-rdflib-jsonld          | 0.4.0                           | 0.5.0                           | Michael R. Crusoe                                                       | Andreas Tille        | 2019-09-04 15:04:36+00
  python-xopen                  | 0.8.4                           | 0.9.0                           | Andreas Tille                                                           | Steffen Moeller      | 2019-11-05 15:34:45+00
  q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2019-12-16 10:20:08+00
+ q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2020-01-26 07:34:32+00
+ q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2020-01-26 07:34:40+00
+ q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                       | Liubov Chuprikova    | 2019-11-14 22:00:17+00
  qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                         | Liubov Chuprikova    | 2019-12-16 09:51:27+00
  resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200408.0322c0d         | Andreas Tille                                                           | Andreas Tille        | 2019-11-16 23:00:12+00
  seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                                            | Andreas Tille        | 2018-05-09 13:43:40+00
@@ -58,13 +63,13 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000
  skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                           | Andreas Tille        | 2019-08-20 14:49:33+00
  snakemake                     | 5.10.0                          | 5.14.0                          | Kevin Murray                                                            | Andreas Tille        | 2020-04-09 09:34:37+00
  spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille        | 2019-11-22 10:05:04+00
- spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                           | Andreas Tille        | 2019-09-16 11:53:05+00
  sra-sdk                       | 2.9.3                           | 2.10.5                          | Andreas Tille,Charles Plessy                                            | Steffen Moeller      | 2018-10-23 20:40:02+00
  stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                                 | Steffen Moeller      | 2020-03-26 02:50:13+00
  t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                           | Andreas Tille        | 2019-02-15 07:57:10+00
  unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                                            | Adrian Bunk          | 2019-02-06 07:34:42+00
+ vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                 | Andreas Tille        | 2019-12-17 10:07:09+00
  xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                  | Andreas Tille        | 2019-01-25 18:23:59+00
-(62 rows)
+(67 rows)
 
 
  source                        |   id   | severity  |                                                                                               title                                                                                               



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f5ad4d9bfbda0f655b50d6dedb6934b846c4b07

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