Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e5465882 by Andreas Tille at 2020-04-16T13:44:35+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,47 @@
-Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
+Last-Update: Thu, 16 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
+ dcmtk | 176 | {covid-19,imaging} |
orthanc | 98 | {imaging,covid-19,practice} |
gdcm | 43 | {imaging-dev} |
orthanc-wsi | 38 | {laboratory,imaging,his,practice,covid-19,oncology} |
amide | 28 | {imaging} |
htsjdk | 28 | {bio-dev} |
- dcm2niix | 26 | {imaging} |
+ dcm2niix | 27 | {imaging} |
dicom3tools | 26 | {imaging} |
- dicomscope | 24 | {imaging} |
+ dicomscope | 25 | {imaging} |
gdcm | 24 | {imaging,covid-19} |
gnumed-server | 21 | {covid-19,practice} |
ngs-sdk | 17 | {bio-dev} |
adun.app | 13 | {bio} |
- invesalius | 13 | {imaging} |
+ king | 13 | {imaging,typesetting} |
minc-tools | 13 | {imaging} |
hunspell-en-med | 12 | {tools} |
- king | 12 | {imaging,typesetting} |
+ invesalius | 12 | {imaging} |
openslide | 12 | {imaging} |
pixelmed | 12 | {imaging} |
gdcm | 11 | {imaging-dev} |
ncbi-entrez-direct | 11 | {bio} |
- ngs-sdk | 11 | {bio-dev} |
biosig4c++ | 10 | {imaging,physics} |
+ gasic | 10 | {cloud,bio} |
mia | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
ea-utils | 9 | {bio} |
- gasic | 9 | {cloud,bio} |
insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
- psychopy | 9 | {psychology} |
staden | 9 | {bio} |
cgview | 8 | {bio} |
librg-utils-perl | 8 | {bio} |
+ obitools | 8 | {bio} |
+ parsnp | 8 | {bio} |
+ psychopy | 8 | {psychology} |
tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
+ fitgcp | 7 | {cloud,bio} |
king-probe | 7 | {bio} |
mipe | 7 | {cloud,bio} |
- obitools | 7 | {bio} |
- parsnp | 7 | {bio} |
salmon | 7 | {bio} |
anfo | 6 | {bio,cloud} |
arden | 6 | {cloud,bio} |
@@ -48,19 +49,19 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
dazzdb | 6 | {bio} |
diamond-aligner | 6 | {bio,covid-19} |
ecopcr | 6 | {bio} |
- fitgcp | 6 | {cloud,bio} |
lagan | 6 | {bio} |
mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
- openslide | 6 | {imaging-dev} |
orthanc-webviewer | 6 | {imaging} |
paml | 6 | {bio} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
abacas | 5 | {bio} |
ampliconnoise | 5 | {cloud,bio} |
+ biomaj3-cli | 5 | {cloud} |
+ biomaj3-daemon | 5 | {bio} |
bppsuite | 5 | {bio} |
clonalorigin | 5 | {bio} |
codonw | 5 | {bio} |
@@ -87,8 +88,6 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
bart-view | 4 | {imaging} |
beads | 4 | {bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
- biomaj3-cli | 4 | {cloud} |
- biomaj3-daemon | 4 | {bio} |
bio-rainbow | 4 | {bio} |
bio-tradis | 4 | {bio,bio-dev} |
bitseq | 4 | {bio} |
@@ -110,9 +109,11 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
libncl | 4 | {bio} |
libsbml | 4 | {bio-dev} |
maqview | 4 | {bio} |
+ microbegps | 4 | {bio} |
murasaki | 4 | {bio} |
phyutility | 4 | {bio,cloud} |
placnet | 4 | {bio} |
+ poretools | 4 | {bio} |
pscan-chip | 4 | {bio} |
pscan-tfbs | 4 | {bio} |
rdp-alignment | 4 | {bio} |
@@ -144,16 +145,16 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
librdp-taxonomy-tree-java | 3 | {bio-dev} |
mapsembler2 | 3 | {cloud,bio} |
mauve-aligner | 3 | {bio} |
- microbegps | 3 | {bio} |
mlv-smile | 3 | {bio,cloud} |
nutsqlite | 3 | {tools} |
+ openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
paraclu | 3 | {cloud,bio} |
perm | 3 | {bio,cloud} |
- poretools | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
probabel | 3 | {bio,cloud} |
+ qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
rdp-classifier | 3 | {bio} |
saint | 3 | {bio} |
@@ -187,7 +188,6 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
pilon | 2 | {bio} |
prottest | 2 | {bio,bio-phylogeny} |
qcumber | 2 | {bio} |
- qrisk2 | 2 | {practice} |
rampler | 2 | {bio} |
roguenarok | 2 | {bio} |
rtax | 2 | {cloud,bio} |
@@ -217,6 +217,7 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
embassy-phylip | 1 | {cloud,bio} |
kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libsmithwaterman | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -228,6 +229,7 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ python-py2bit | 1 | {bio-dev,bio} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
seqan | 1 | {bio-dev} |
@@ -264,7 +266,6 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -296,7 +297,6 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
oscar | 0 | {practice,data,tools} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-py2bit | 0 | {bio-dev,bio} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,68 +1,75 @@
-Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
+Last-Update: Thu, 16 Apr 2020 13:42:04 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- bbmap | 38.79 | 38.81 | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00
- bcbio | 1.2.0 | 1.2.3 | Steffen Moeller | Andreas Tille | 2020-03-11 20:50:02+00
- biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
- biomaj3-core | 3.0.19 | 3.0.23 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
- dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
- discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
- elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
- hyphy | 2.5.1 | 2.5.8 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52v | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
- kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libgclib | 0.11.4 | 0.11.8 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200409.de58067 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
- libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
- macs | 2.2.6 | 2.2.7.1 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-28 15:21:42+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- minia | 3.2.1+git20191130.5b131b9 | 3.2.1+git20200409.489e374 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-12-16 09:04:06+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2020-04-15 07:03:49+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
- nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
- pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
- plink2 | 2.00~a3-200217 | 200409 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
- python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.5.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
- python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
- python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
- q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.2.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
- snakemake | 5.10.0 | 5.14.0 | Kevin Murray | Andreas Tille | 2020-04-09 09:34:37+00
- stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
- unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(60 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
+ artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ bbmap | 38.79 | 38.81 | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00
+ bcbio | 1.2.0 | 1.2.3 | Steffen Moeller | Andreas Tille | 2020-03-11 20:50:02+00
+ beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
+ bedops | 2.4.37 | 2.4.39 | Olivier Sallou | Andreas Tille | 2020-01-11 06:49:13+00
+ biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00
+ biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
+ biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
+ dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
+ discosnp | 2.4.3 | 4.4.4 | Andreas Tille,Olivier Sallou | Andreas Tille | 2020-01-27 15:19:13+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
+ epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
+ fis-gtm | 6.3-007 | 6.3-012 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00
+ hyphy | 2.5.1 | 2.5.8 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52v | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ ismrmrd | 1.4.0 | 1.4.2.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libgclib | 0.11.4 | 0.11.8 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200412.bd83097 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
+ libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
+ macs | 2.2.6 | 2.2.7.1 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-28 15:21:42+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ minia | 3.2.1+git20191130.5b131b9 | 3.2.1+git20200409.489e374 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-12-16 09:04:06+00
+ mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2020-04-15 07:03:49+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
+ pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
+ pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
+ picard-tools | 2.18.25 | 2.22.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
+ plink2 | 2.00~a3-200217 | 200409 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
+ python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
+ python-bids-validator | 1.2.4 | 1.5.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cgecore | 1.5.3 | 1.5.4 | Andreas Tille | Steffen Moeller | 2020-03-17 12:49:52+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
+ python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-treetime | 0.7.1 | 0.7.5 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
+ python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
+ q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
+ snakemake | 5.10.0 | 5.14.0 | Kevin Murray | Andreas Tille | 2020-04-09 09:34:37+00
+ sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ umis | 1.0.6 | 1.0.7 | Andreas Tille | Andreas Tille | 2020-01-27 07:34:12+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(67 rows)
source | id | severity | title
@@ -143,6 +150,7 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
insighttoolkit4 | 853752 | wishlist | src:insighttoolkit4: Add documentation package
insighttoolkit4 | 943677 | normal | please package insighttoolkit5 (5.0 and 5.1 beta 1 are out)
insighttoolkit4 | 944179 | important | insighttoolkit4: non-standard gcc/g++ used for build (gcc-8)
+ insighttoolkit4 | 956834 | serious | insighttoolkit4: installs Python 3.8 extensions in the folder for Python 3.7
ismrmrd | 863168 | important | ismrmrd FTBFS on armhf: 1 failure is detected in the test module "ISMRMRD Unit Tests"
jellyfish1 | 875328 | wishlist | jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined
khmer | 851830 | minor | arm64 has flaky tests
@@ -172,6 +180,8 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
mriconvert | 617342 | normal | 32-bit multiframe image conversion ignores frames
mummer | 956751 | normal | mummerplot incompatible with Debian's version of gnuplot
ncbi-blast+ | 891197 | normal | Please switch to pcre2
+ ncbi-blast+ | 956848 | normal | ncbi-blast+-legacy: Please provide /usr/bin/blastpgp.pl (including .pl extension)
+ ncbi-blast+ | 956850 | normal | ncbi-blast+: Please provide /usr/bin/legacy_blast
ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want Cn3D++
ncbi-vdb | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
ncbi-vdb | 952627 | serious | libncbi-vdb2 uses undefined symbols
@@ -180,7 +190,6 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
nitime | 955103 | serious | nitime: FTBFS with Sphinx 2.4: AttributeError: 'Sphinx' object has no attribute 'info'
nut-nutrition | 339838 | wishlist | nut-nutrition: Would like to record 'snacks' and change the number of meals
obitools | 935340 | normal | obitools: Port to Python3 needed
- odil | 956749 | serious | odil: FTBFS on mips64el
opencfu | 922589 | serious | FTBFS against opencv 4.0.1 (exp)
openslide-python | 842150 | wishlist | RunningDeepZoomServerOnApache
opensurgsim | 912110 | important | opensurgsim FTBFS: test failures
@@ -259,5 +268,5 @@ Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(192 rows)
+(194 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e546588211f7688afcef4ccc9c1b5aa051a4b91d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e546588211f7688afcef4ccc9c1b5aa051a4b91d
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