[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Thu Apr 16 02:45:17 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
558586cb by Andreas Tille at 2020-04-16T01:45:13+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
+Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
+Last-Update: Thu, 16 Apr 2020 01:42:04 +0000
 
  source                        |             version             |        upstream_version         |                      uploaders                                            | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -35,7 +35,7 @@ Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
  macs                          | 2.2.6                           | 2.2.7.1                         | Andreas Tille,Michael R. Crusoe                                           | Michael R. Crusoe    | 2019-12-28 15:21:42+00
  metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                             | Andreas Tille        | 2019-11-08 07:19:11+00
  minia                         | 3.2.1+git20191130.5b131b9       | 3.2.1+git20200409.489e374       | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2019-12-16 09:04:06+00
- mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                              | Andreas Tille        | 2018-06-11 07:19:31+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                              | Andreas Tille        | 2020-04-15 07:03:49+00
  ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                | Aaron M. Ucko        | 2020-02-17 01:50:53+00
  ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200326                   | Aaron M. Ucko                                                             | Aaron M. Ucko        | 2020-02-03 03:53:53+00
  nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-03 14:58:34+00
@@ -134,6 +134,7 @@ Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
  htsjdk                        | 877590 | normal    | FTBFS: error: package org.testng does not exist
  htsjdk                        | 920588 | normal    | htsjdk: Autopkgtest for htsjdk
  htslib                        | 922860 | normal    | Packages do not contain the upstream README file
+ igraph                        | 956821 | serious   | igraph: FTBFS on arm64, armel, armhf, i386, mipsel, ppc64el, s390x
  igv                           | 940606 | normal    | new upstream (2.6.3)
  insighttoolkit4               | 724711 | wishlist  | insighttoolkit4: Drops architecture support
  insighttoolkit4               | 759794 | wishlist  | insighttoolkit4: FTBFS on amd64 with ENOSPC
@@ -169,14 +170,14 @@ Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
  metaphlan2-data               | 839925 | important | metaphlan2-data: postinst deletes shipped file: /var/lib/metaphlan2-data/markers.fasta
  mipe                          | 890788 | minor     | mipe: Please provide autopkgtest
  mriconvert                    | 617342 | normal    | 32-bit multiframe image conversion ignores frames
- mummer                        | 956746 | important | Perl compatibility error in mummerplot
+ mummer                        | 956751 | normal    | mummerplot incompatible with Debian's version of gnuplot
  ncbi-blast+                   | 891197 | normal    | Please switch to pcre2
  ncbi-tools6                   | 225651 | wishlist  | ncbi-tools-x11: want Cn3D++
  ncbi-vdb                      | 952623 | serious   | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
  ncbi-vdb                      | 952627 | serious   | libncbi-vdb2 uses undefined symbols
  ncbi-vdb                      | 953897 | serious   | libncbi-vdb2 uses undefined symbols
  nibabel                       | 868229 | normal    | NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array
- nitime                        | 955103 | important | nitime: FTBFS with Sphinx 2.4: AttributeError: 'Sphinx' object has no attribute 'info'
+ nitime                        | 955103 | serious   | nitime: FTBFS with Sphinx 2.4: AttributeError: 'Sphinx' object has no attribute 'info'
  nut-nutrition                 | 339838 | wishlist  | nut-nutrition: Would like to record 'snacks' and change the number of meals
  obitools                      | 935340 | normal    | obitools: Port to Python3 needed
  odil                          | 956749 | serious   | odil: FTBFS on mips64el
@@ -246,7 +247,6 @@ Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
  sofa-framework                | 875184 | serious   | [sofa-framework] Future Qt4 removal from Buster
  spades                        | 853113 | normal    | spades: Fails to build with unhelpful error message in a "low" memory machine
  spdlog                        | 953855 | normal    | libspdlog-dev: tries to include file that doesn't exist
- sprai                         | 956473 | wishlist  | sprai: please make the build reproducible
  sra-sdk                       | 943231 | normal    | sra-sdk: Python2 removal in sid/bullseye
  tree-puzzle                   | 806214 | normal    | tree-puzzle: Package fails test suite
  tree-puzzle                   | 890790 | minor     | tree-puzzle: Please provide autopkgtest



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/558586cb15f41e85f87ee35dbd7be7364f39197b

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/558586cb15f41e85f87ee35dbd7be7364f39197b
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