[med-svn] [Git][med-team/bowtie2][master] 2 commits: Add patch fixing ftbfs with gcc10, thanks to Jun Aruga

[Alexandre Mestiashvili]

Alexandre Mestiashvili pushed to branch master at Debian Med / bowtie2


Commits:
62d5e31b by Alexandre Mestiashvili at 2020-04-19T11:10:30+02:00
Add patch fixing ftbfs with gcc10, thanks to Jun Aruga

- - - - -
faabd9d8 by Alexandre Mestiashvili at 2020-04-19T11:12:46+02:00
Update changelog

Gbp-Dch: Ignore

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/gcc10_ftbfs_invalid_dquote_char.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+bowtie2 (2.4.1-2) unstable; urgency=medium
+
+  * Add patch fixing FTBFS with gcc10, thanks to Jun Aruga
+    Closes: #957054
+
+ -- Alexandre Mestiashvili <mestia at debian.org>  Sun, 19 Apr 2020 11:11:42 +0200
+
 bowtie2 (2.4.1-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/gcc10_ftbfs_invalid_dquote_char.patch
=====================================
@@ -0,0 +1,14 @@
+From: mestia at debian.org
+Description: Use proper double quotes, see
+https://github.com/BenLangmead/bowtie2/issues/278
+--- bowtie2.orig/processor_support.h
++++ bowtie2/processor_support.h
+@@ -49,7 +49,7 @@
+ #elif defined(USING_GCC_COMPILER)
+         __get_cpuid(0x1, &regs.EAX, &regs.EBX, &regs.ECX, &regs.EDX);
+ #else
+-        std::cerr << “ERROR: please define __cpuid() for this build.\n”; 
++        std::cerr << "ERROR: please define __cpuid() for this build.\n"; 
+         assert(0);
+ #endif
+         if( !( (regs.ECX & BIT(20)) && (regs.ECX & BIT(23)) ) ) return false;


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
+gcc10_ftbfs_invalid_dquote_char.patch
 drop-not-needed-js-from-manual.patch
 wrong-interpreter-path.patch
 hardening.patch



View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/c801da14953540bafd3005114d045776db47eb70...faabd9d8e0d57c67a9dd147cae90faba86b2457b

-- 
View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/c801da14953540bafd3005114d045776db47eb70...faabd9d8e0d57c67a9dd147cae90faba86b2457b
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