[med-svn] [Git][med-team/kmer][master] Updated spelling.patch & d/upstream/metadata: Repository and Bug

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / kmer


Commits:
81d0ff4a by Antoni Villalonga at 2020-04-19T10:11:50+00:00
Updated spelling.patch & d/upstream/metadata: Repository and Bug

- - - - -


4 changed files:

- debian/changelog
- debian/man/leaff/leaff.1
- debian/patches/spelling.patch
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+kmer (0~20150903+r2013-8) UNRELEASED; urgency=medium
+
+  * Team upload.
+
+  [ Antoni Villalonga ]
+  * d/upstream/metadata: Repository and Bug
+  * Updated spelling.patch
+
+-- Antoni Villalonga <ntoni at friki.cat>  Sat, 19 Apr 2020 17:59:48 +0200
+
 kmer (0~20150903+r2013-7) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/man/leaff/leaff.1
=====================================
@@ -72,7 +72,7 @@ ANALYSIS FUNCTIONS
    --partitionmap         [ n[gmk]bp | n ] a.fasta
                 Partition the sequences into roughly equal size pieces of
                 size nbp, nkbp, nmbp or ngbp; or into n roughly equal sized
-                parititions.  Sequences larger that the partition size are
+                partitions.  Sequences larger that the partition size are
                 in a partition by themself.  --partitionmap writes a
                 description of the partition to stdout; --partiton creates
                 a fasta file 'prefix-###.fasta' for each partition.


=====================================
debian/patches/spelling.patch
=====================================
@@ -1,10 +1,10 @@
 Description: Fix spelling
-Author: Andreas Tille <tille at debian.org>
-Last-Update: Sun, 05 Aug 2018 05:47:52 +0200
+Author: Andreas Tille <tille at debian.org>, Antoni Villalonga <antoni at friki.cat>
+Last-Update: Sat, 11 Apr 2020 22:30:00 +0200
 
 --- a/libutil/bitPackedFile.C
 +++ b/libutil/bitPackedFile.C
-@@ -157,7 +157,7 @@ bitPackedFile::bitPackedFile(char const
+@@ -157,7 +157,7 @@
      } else if ((at == uint64Swap(ac)) && (bt == uint64Swap(bc))) {
        endianess_flipped = true;
      } else {
@@ -15,7 +15,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200
    } else {
 --- a/libkmer/driver-existDB.C
 +++ b/libkmer/driver-existDB.C
-@@ -178,7 +178,7 @@ const char *usage =
+@@ -178,7 +178,7 @@
  "\n"
  "       -testexhaustive some.fasta some.meryl\n"
  "         -- Build an existDB table from some.fasta, check _EVERY_ mer\n"
@@ -26,7 +26,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200
  "\n";
 --- a/libutil/palloc.c
 +++ b/libutil/palloc.c
-@@ -133,7 +133,7 @@ palloc2(size_t size, void *handle) {
+@@ -133,7 +133,7 @@
      root->_cn = root->_nl;
  
      if (root->_dbg > 0)
@@ -37,7 +37,7 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200
      root->_cn->_dt = (char *)really_allocate(root->_bs);
 --- a/sim4dbutils/parseSNP.C
 +++ b/sim4dbutils/parseSNP.C
-@@ -491,7 +491,7 @@ main(int argc, char **argv) {
+@@ -491,7 +491,7 @@
      fprintf(stderr, "                                 default, and if posTag is not found.\n");
      fprintf(stderr, "\n");
      fprintf(stderr, "                                 TAGS: The number immediately after the first\n");
@@ -46,3 +46,14 @@ Last-Update: Sun, 05 Aug 2018 05:47:52 +0200
      fprintf(stderr, "\n");
      fprintf(stderr, "             -o offset           An additive offset to the SNP position.\n");
      fprintf(stderr, "                                 The default is 0.\n");
+--- a/leaff/leaff.C
++++ b/leaff/leaff.C
+@@ -126,7 +126,7 @@
+   fprintf(stderr, "   --partitionmap         [ n[gmk]bp | n ] a.fasta\n");
+   fprintf(stderr, "                Partition the sequences into roughly equal size pieces of\n");
+   fprintf(stderr, "                size nbp, nkbp, nmbp or ngbp; or into n roughly equal sized\n");
+-  fprintf(stderr, "                parititions.  Sequences larger that the partition size are\n");
++  fprintf(stderr, "                partitions.  Sequences larger that the partition size are\n");
+   fprintf(stderr, "                in a partition by themself.  --partitionmap writes a\n");
+   fprintf(stderr, "                description of the partition to stdout; --partiton creates\n");
+   fprintf(stderr, "                a fasta file 'prefix-###.fasta' for each partition.\n");


=====================================
debian/upstream/metadata
=====================================
@@ -42,3 +42,7 @@ Registry:
   Entry: atac
 - Name: conda:bioconda
   Entry: atac, meryl
+Repository: svn://svn.code.sf.net/p/kmer/code/trunk
+Repository-Browse: https://sourceforge.net/p/kmer/code/HEAD/tree/
+Bug-Database: https://sourceforge.net/p/kmer/bugs/
+Bug-Submit: https://sourceforge.net/p/kmer/bugs/new/



View it on GitLab: https://salsa.debian.org/med-team/kmer/-/commit/81d0ff4a890f296b8a02aa31baf2689293a1e005

-- 
View it on GitLab: https://salsa.debian.org/med-team/kmer/-/commit/81d0ff4a890f296b8a02aa31baf2689293a1e005
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200419/901ff7eb/attachment-0001.html>