Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
33ae09f8 by Andreas Tille at 2020-04-20T13:45:07+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,107 +1,102 @@
-Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
+Last-Update: Mon, 20 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {covid-19,imaging} |
- orthanc | 96 | {practice,covid-19,imaging} |
- gdcm | 40 | {imaging-dev} |
- orthanc-wsi | 39 | {practice,laboratory,imaging,his,covid-19,oncology} |
+ dcmtk | 175 | {covid-19,imaging} |
+ orthanc | 95 | {practice,covid-19,imaging} |
+ gdcm | 39 | {imaging-dev} |
+ orthanc-wsi | 38 | {practice,laboratory,imaging,his,covid-19,oncology} |
amide | 29 | {imaging} |
+ dcm2niix | 29 | {imaging} |
dicomscope | 29 | {imaging} |
- dcm2niix | 28 | {imaging} |
- dicom3tools | 26 | {imaging} |
+ dicom3tools | 28 | {imaging} |
gdcm | 26 | {imaging,covid-19} |
- htsjdk | 25 | {bio-dev} |
- gnumed-server | 21 | {practice,covid-19} |
- ngs-sdk | 17 | {bio-dev} |
- minc-tools | 15 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ gnumed-server | 20 | {practice,covid-19} |
+ minc-tools | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
+ invesalius | 15 | {imaging} |
+ king | 15 | {typesetting,imaging} |
+ openslide | 15 | {imaging} |
+ pixelmed | 15 | {imaging} |
adun.app | 14 | {bio} |
- king | 14 | {typesetting,imaging} |
- openslide | 14 | {imaging} |
- pixelmed | 14 | {imaging} |
plastimatch | 14 | {imaging} |
hunspell-en-med | 13 | {tools} |
- invesalius | 13 | {imaging} |
- gasic | 12 | {cloud,bio} |
- biosig4c++ | 11 | {imaging,physics} |
+ biosig4c++ | 12 | {imaging,physics} |
+ mia | 12 | {imaging} |
+ vtk-dicom | 12 | {imaging} |
+ gasic | 11 | {cloud,bio} |
gdcm | 11 | {imaging-dev} |
- mia | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
- ea-utils | 10 | {bio} |
- ncbi-entrez-direct | 10 | {bio} |
- parsnp | 10 | {bio} |
- fitgcp | 9 | {bio,cloud} |
- librg-utils-perl | 9 | {bio} |
+ ea-utils | 9 | {bio} |
+ jebl2 | 9 | {bio-dev} |
+ ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
+ parsnp | 9 | {bio} |
staden | 9 | {bio} |
tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
- biojava-live | 8 | {bio-dev} |
- cgview | 8 | {bio} |
+ fitgcp | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
- king-probe | 8 | {bio} |
+ librg-utils-perl | 8 | {bio} |
mipe | 8 | {bio,cloud} |
- diamond-aligner | 7 | {bio,covid-19} |
- jebl2 | 7 | {bio-dev} |
- lagan | 7 | {bio} |
- ncbi-seg | 7 | {bio} |
+ salmon | 8 | {bio} |
+ biojava-live | 7 | {bio-dev} |
+ fastlink | 7 | {bio,cloud} |
+ king-probe | 7 | {bio} |
neobio | 7 | {cloud,bio} |
- norsp | 7 | {bio} |
paml | 7 | {bio} |
psychopy | 7 | {psychology} |
- rambo-k | 7 | {bio} |
- salmon | 7 | {bio} |
- arden | 6 | {cloud,bio} |
- bppsuite | 6 | {bio} |
+ ampliconnoise | 6 | {bio,cloud} |
+ cgview | 6 | {bio} |
+ cluster3 | 6 | {bio} |
dazzdb | 6 | {bio} |
- ecopcr | 6 | {bio} |
- fastlink | 6 | {bio,cloud} |
+ diamond-aligner | 6 | {bio,covid-19} |
+ freebayes | 6 | {bio} |
+ jaligner | 6 | {bio} |
+ lagan | 6 | {bio} |
+ libncl | 6 | {bio} |
melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
+ ncbi-seg | 6 | {bio} |
+ norsp | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
phast | 6 | {bio} |
piler | 6 | {bio} |
- predictprotein | 6 | {bio} |
- pscan-tfbs | 6 | {bio} |
pymia | 6 | {imaging-dev} |
- seqsero | 6 | {bio} |
+ rambo-k | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
sigma-align | 6 | {bio-phylogeny,cloud,bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
sumatra | 6 | {bio} |
- ampliconnoise | 5 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
+ arden | 5 | {cloud,bio} |
+ bandage | 5 | {bio} |
biomaj3-cli | 5 | {cloud} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
- bitseq | 5 | {bio} |
- cluster3 | 5 | {bio} |
+ bppsuite | 5 | {bio} |
+ centrifuge | 5 | {bio} |
codonw | 5 | {bio} |
+ ecopcr | 5 | {bio} |
edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
- freebayes | 5 | {bio} |
freecontact | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
- harvest-tools | 5 | {bio} |
indelible | 5 | {bio} |
- jaligner | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- libncl | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
maqview | 5 | {bio} |
mencal | 5 | {tools} |
microbegps | 5 | {bio} |
- murasaki | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
poretools | 5 | {bio} |
+ predictprotein | 5 | {bio} |
prime-phylo | 5 | {bio,cloud} |
- pscan-chip | 5 | {bio} |
- radiant | 5 | {bio} |
seer | 5 | {bio} |
+ seqsero | 5 | {bio} |
seqtools | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
squizz | 5 | {cloud,bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
@@ -109,35 +104,40 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
alter-sequence-alignment | 4 | {bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
- bandage | 4 | {bio} |
bart-view | 4 | {imaging} |
beads | 4 | {bio} |
- brig | 4 | {bio} |
- centrifuge | 4 | {bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ bitseq | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
daligner | 4 | {bio,bio-ngs} |
dascrubber | 4 | {bio} |
+ delly | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
dwgsim | 4 | {bio} |
- estscan | 4 | {bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
ghmm | 4 | {bio} |
+ harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
+ libsmithwaterman | 4 | {bio} |
mapsembler2 | 4 | {bio,cloud} |
mauve-aligner | 4 | {bio} |
mlv-smile | 4 | {bio,cloud} |
+ murasaki | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
perm | 4 | {bio,cloud} |
+ phybin | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
probabel | 4 | {bio,cloud} |
- quorum | 4 | {bio} |
+ pscan-chip | 4 | {bio} |
+ pscan-tfbs | 4 | {bio} |
+ radiant | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
rdp-readseq | 4 | {bio} |
@@ -146,25 +146,25 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
saint | 4 | {bio} |
scythe | 4 | {bio} |
sickle | 4 | {bio} |
- soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
tracetuner | 4 | {bio} |
transrate-tools | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
+ brig | 3 | {bio} |
canu | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
elph | 3 | {bio} |
+ estscan | 3 | {bio} |
hinge | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
libgff | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
- libsmithwaterman | 3 | {bio} |
- logol | 3 | {bio} |
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
mptp | 3 | {bio} |
nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
@@ -172,10 +172,10 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
phipack | 3 | {bio} |
- phybin | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
+ quorum | 3 | {bio} |
roguenarok | 3 | {bio} |
rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
@@ -186,12 +186,12 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
sga | 3 | {bio} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
atropos | 2 | {bio} |
beast2-mcmc | 2 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
@@ -200,19 +200,15 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
getdata | 2 | {bio} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
- lucy | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
+ logol | 2 | {bio} |
nanook | 2 | {bio} |
pal2nal | 2 | {bio} |
- pbdagcon | 2 | {bio} |
pilon | 2 | {bio} |
rampler | 2 | {bio} |
- samtools-legacy | 2 | {bio-dev} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
- thesias | 2 | {bio,covid-19} |
tvc | 2 | {bio} |
varscan | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
@@ -231,14 +227,17 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
+ pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
+ thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
acedb | 0 | {bio,cloud} |
@@ -312,5 +311,5 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(340 rows)
+(339 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/33ae09f8c75c22614f5d44ec5c1c9fa75ea90621
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/33ae09f8c75c22614f5d44ec5c1c9fa75ea90621
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