[med-svn] [Git][med-team/salmon][master] 11 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / salmon


Commits:
735c370c by Michael R. Crusoe at 2020-04-22T18:58:16+02:00
routine-update: New upstream version

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7e1f5913 by Michael R. Crusoe at 2020-04-22T18:58:18+02:00
New upstream version 1.2.1+ds1
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7cde0ede by Michael R. Crusoe at 2020-04-22T18:58:24+02:00
Update upstream source from tag 'upstream/1.2.1+ds1'

Update to upstream version '1.2.1+ds1'
with Debian dir 36d15dfa1ba91f741c460064c7665077a9a0644b
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8f183971 by Michael R. Crusoe at 2020-04-22T19:02:47+02:00
freshen patches

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b389b817 by Michael R. Crusoe at 2020-04-22T19:03:49+02:00
routine-update: Add salsa-ci file

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f728eea6 by Michael R. Crusoe at 2020-04-22T19:03:50+02:00
routine-update: Rules-Requires-Root: no

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e3d9a1f7 by Michael R. Crusoe at 2020-04-22T19:03:52+02:00
Remove duplicate line from changelog.
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439afbab by Michael R. Crusoe at 2020-04-23T12:01:29+02:00
refresh pufferfish

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cc943bd4 by Michael R. Crusoe at 2020-04-23T12:01:30+02:00
restore kseq.h

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2a8ce363 by Michael R. Crusoe at 2020-04-23T12:11:48+02:00
package builds, close bug

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fdd135da by Michael R. Crusoe at 2020-04-23T12:13:21+02:00
release 1.2.1+ds1-1 to unstable

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28 changed files:

- .drone/build.sh
- + .lgtm.yml
- .travis.yml
- CMakeLists.txt
- + CODE_OF_CONDUCT.md
- README.md
- current_version.txt
- debian/changelog
- debian/control
- debian/copyright
- debian/external/install/include/pufferfish/CanonicalKmer.hpp
- debian/external/install/include/pufferfish/Kmer.hpp
- debian/external/install/include/pufferfish/MemChainer.hpp
- debian/external/install/include/pufferfish/MemCollector.hpp
- debian/external/install/include/pufferfish/ProgOpts.hpp
- debian/external/install/include/pufferfish/PuffAligner.hpp
- debian/external/install/include/pufferfish/Util.hpp
- + debian/external/install/include/pufferfish/libdivide/libdivide.h
- debian/external/pufferfish/CMakeLists.txt
- debian/external/pufferfish/README.md
- debian/external/pufferfish/external/twopaco/graphconstructor/vertexenumerator.cpp
- debian/external/pufferfish/include/CanonicalKmer.hpp
- debian/external/pufferfish/include/Kmer.hpp
- debian/external/pufferfish/include/MemChainer.hpp
- debian/external/pufferfish/include/MemCollector.hpp
- debian/external/pufferfish/include/ProgOpts.hpp
- debian/external/pufferfish/include/PuffAligner.hpp
- debian/external/pufferfish/include/Util.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/4d1c589683219d64abcd09f153a6f781a629a7e4...fdd135da859ad24b7b0b28627a9a454a770ca0e2

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View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/4d1c589683219d64abcd09f153a6f781a629a7e4...fdd135da859ad24b7b0b28627a9a454a770ca0e2
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