Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
13c9c600 by Andreas Tille at 2020-04-24T13:45:08+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,111 +1,111 @@
-Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
+Last-Update: Fri, 24 Apr 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {covid-19,imaging} |
- orthanc | 93 | {practice,covid-19,imaging} |
- gdcm | 42 | {imaging-dev} |
- orthanc-wsi | 37 | {practice,laboratory,imaging,his,covid-19,oncology} |
- dicom3tools | 34 | {imaging} |
- dicomscope | 33 | {imaging} |
+ dcmtk | 172 | {imaging,covid-19} |
+ orthanc | 91 | {covid-19,practice,imaging} |
+ gdcm | 44 | {imaging-dev} |
+ orthanc-wsi | 37 | {imaging,practice,laboratory,oncology,his,covid-19} |
+ dicom3tools | 33 | {imaging} |
+ dicomscope | 32 | {imaging} |
amide | 31 | {imaging} |
- dcm2niix | 31 | {imaging} |
- gdcm | 31 | {imaging,covid-19} |
- htsjdk | 25 | {bio-dev} |
- gnumed-server | 20 | {practice,covid-19} |
- openslide | 20 | {imaging} |
- minc-tools | 19 | {imaging} |
- pixelmed | 19 | {imaging} |
- king | 18 | {typesetting,imaging} |
+ gdcm | 30 | {covid-19,imaging} |
+ dcm2niix | 29 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
+ gnumed-server | 19 | {practice,covid-19} |
+ openslide | 19 | {imaging} |
+ minc-tools | 18 | {imaging} |
+ pixelmed | 18 | {imaging} |
+ king | 17 | {typesetting,imaging} |
ngs-sdk | 17 | {bio-dev} |
- plastimatch | 17 | {imaging} |
+ hunspell-en-med | 16 | {tools} |
invesalius | 16 | {imaging} |
- biosig4c++ | 15 | {imaging,physics} |
- hunspell-en-med | 15 | {tools} |
- mia | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- adun.app | 14 | {bio} |
+ plastimatch | 16 | {imaging} |
+ biosig4c++ | 14 | {imaging,physics} |
+ mia | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ adun.app | 13 | {bio} |
gasic | 11 | {cloud,bio} |
gdcm | 11 | {imaging-dev} |
obitools | 11 | {bio} |
jebl2 | 10 | {bio-dev} |
- ea-utils | 9 | {bio} |
insighttoolkit4 | 9 | {imaging-dev} |
mipe | 9 | {bio,cloud} |
ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
- staden | 9 | {bio} |
tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
biojava-live | 8 | {bio-dev} |
+ ea-utils | 8 | {bio} |
fitgcp | 8 | {bio,cloud} |
+ jaligner | 8 | {bio} |
librg-utils-perl | 8 | {bio} |
- ampliconnoise | 7 | {bio,cloud} |
+ staden | 8 | {bio} |
+ ampliconnoise | 7 | {cloud,bio} |
+ cgview | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
- jaligner | 7 | {bio} |
- king-probe | 7 | {bio} |
- neobio | 7 | {cloud,bio} |
paml | 7 | {bio} |
- salmon | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
arden | 6 | {cloud,bio} |
biomaj3-cli | 6 | {cloud} |
bppsuite | 6 | {bio} |
- cgview | 6 | {bio} |
cluster3 | 6 | {bio} |
codonw | 6 | {bio} |
dazzdb | 6 | {bio} |
- delly | 6 | {covid-19,bio} |
- diamond-aligner | 6 | {bio,covid-19} |
+ diamond-aligner | 6 | {covid-19,bio} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domainatrix | 6 | {cloud,bio} |
+ embassy-domainatrix | 6 | {bio,cloud} |
freebayes | 6 | {bio} |
- freecontact | 6 | {bio,cloud} |
+ freecontact | 6 | {cloud,bio} |
indelible | 6 | {bio} |
+ king-probe | 6 | {bio} |
+ libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
- melting | 6 | {bio,cloud} |
+ melting | 6 | {cloud,bio} |
mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
+ neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
prime-phylo | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
+ salmon | 6 | {bio} |
seer | 6 | {bio} |
seqsero | 6 | {bio} |
- sibsim4 | 6 | {cloud,bio} |
- sigma-align | 6 | {bio-phylogeny,cloud,bio} |
- spread-phy | 6 | {bio,bio-phylogeny} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {cloud,bio-phylogeny,bio} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
anfo | 5 | {cloud,bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
clonalorigin | 5 | {bio} |
daligner | 5 | {bio,bio-ngs} |
+ delly | 5 | {bio,covid-19} |
embassy-domalign | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {cloud,bio} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
- libminc | 5 | {imaging-dev} |
mapsembler2 | 5 | {bio,cloud} |
maqview | 5 | {bio} |
mencal | 5 | {tools} |
+ mhap | 5 | {bio,bio-ngs} |
microbegps | 5 | {bio} |
- orthanc-webviewer | 5 | {imaging} |
- paraclu | 5 | {cloud,bio} |
+ paraclu | 5 | {bio,cloud} |
phybin | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
+ phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {bio,cloud} |
+ probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
radiant | 5 | {bio} |
@@ -119,12 +119,13 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
- zalign | 5 | {bio,cloud} |
- abacas | 4 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ abacas | 4 | {covid-19,bio} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bart-view | 4 | {imaging} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
+ brig | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
@@ -141,12 +142,12 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
libsbml | 4 | {bio-dev} |
libsmithwaterman | 4 | {bio} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio,bio-ngs} |
murasaki | 4 | {bio} |
- perm | 4 | {bio,cloud} |
+ orthanc-webviewer | 4 | {imaging} |
+ perm | 4 | {cloud,bio} |
poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- prottest | 4 | {bio-phylogeny,bio} |
+ prottest | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
@@ -156,10 +157,9 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
- tnseq-transit | 4 | {covid-19,bio} |
+ tnseq-transit | 4 | {bio,covid-19} |
tracetuner | 4 | {bio} |
- biosig4c++ | 3 | {imaging-dev,physics} |
- brig | 3 | {bio} |
+ biosig4c++ | 3 | {physics,imaging-dev} |
canu | 3 | {bio} |
elph | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -174,7 +174,7 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
mptp | 3 | {bio} |
nutsqlite | 3 | {tools} |
openslide | 3 | {imaging-dev} |
- orthanc-dicomweb | 3 | {imaging,covid-19} |
+ orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
@@ -213,11 +213,11 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {bio} |
+ varscan | 2 | {covid-19,bio} |
velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
- biobambam2 | 1 | {covid-19,bio-dev,bio} |
- blasr | 1 | {bio,bio-ngs} |
+ biobambam2 | 1 | {bio-dev,covid-19,bio} |
+ blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
@@ -228,12 +228,12 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
- oscar | 1 | {tools,practice,data} |
+ oscar | 1 | {data,practice,tools} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio,bio-dev} |
+ python-py2bit | 1 | {bio-dev,bio} |
python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
@@ -242,9 +242,9 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
spaln | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
+ tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {bio,cloud} |
+ acedb | 0 | {cloud,bio} |
augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
@@ -289,7 +289,7 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio} |
+ multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
@@ -302,9 +302,9 @@ Last-Update: Fri, 24 Apr 2020 01:42:03 +0000
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/13c9c6006ae253c8d387fb545c45abff2a7d0cba
--
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