[med-svn] [Git][med-team/bedops][master] 4 commits: New upstream version 2.4.39+dfsg

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bedops


Commits:
13ce897e by Steffen Moeller at 2020-04-27T15:58:12+02:00
New upstream version 2.4.39+dfsg
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bbeb42b2 by Steffen Moeller at 2020-04-27T15:58:12+02:00
routine-update: New upstream version

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9a243fe3 by Steffen Moeller at 2020-04-27T15:58:25+02:00
Update upstream source from tag 'upstream/2.4.39+dfsg'

Update to upstream version '2.4.39+dfsg'
with Debian dir 66655f22c40a677cfc0502dbfe4eb28de7dd9be0
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13f58d66 by Steffen Moeller at 2020-04-27T16:11:33+02:00
routine-update: Standards-Version: 4.5.0

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30 changed files:

- Makefile
- README.md
- applications/bed/bedextract/src/ExtractRows.cpp
- applications/bed/bedmap/src/Bedmap.cpp
- applications/bed/bedmap/src/Input.hpp
- applications/bed/bedmap/src/TDefs.hpp
- applications/bed/bedops/src/BedPadReader.hpp
- applications/bed/bedops/src/Bedops.cpp
- applications/bed/bedops/src/Input.hpp
- applications/bed/closestfeats/src/BedReader.hpp
- applications/bed/closestfeats/src/ClosestFeature.cpp
- applications/bed/closestfeats/src/Input.hpp
- applications/bed/closestfeats/src/Printers.hpp
- applications/bed/conversion/src/convert2bed.c
- applications/bed/conversion/src/convert2bed.h
- applications/bed/conversion/src/tests/gtf/sample.expected.bed
- applications/bed/conversion/src/tests/gtf/sample.expected.gzip.starch
- applications/bed/conversion/src/tests/gtf/sample.expected.starch
- applications/bed/sort-bed/src/CheckSort.cpp
- applications/bed/sort-bed/src/Sort.cpp
- applications/bed/sort-bed/src/SortDetails.cpp
- applications/bed/sort-bed/src/Structures.hpp
- applications/bed/sort-bed/src/update-sort-bed-migrate-candidates.py
- applications/bed/sort-bed/src/update-sort-bed-slurm.py
- applications/bed/sort-bed/src/update-sort-bed-starch-slurm.py
- applications/bed/starch/src/Makefile.darwin
- applications/bed/starch/src/starch-diff.py
- applications/bed/starch/src/starch.c
- applications/bed/starch/src/starch.h
- applications/bed/starch/src/starchcat.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bedops/-/compare/0ceb0cf9a00a2502e100f29a23c370f1fe47f4c2...13f58d66fbf500d7f65e423411d18c055455dbec

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View it on GitLab: https://salsa.debian.org/med-team/bedops/-/compare/0ceb0cf9a00a2502e100f29a23c370f1fe47f4c2...13f58d66fbf500d7f65e423411d18c055455dbec
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