[med-svn] [Git][med-team/snakemake][master] 5 commits: Stop using pytest-xdist: it sometimes starts tests from a non-main thread, which breaks snakemake.

[Rebecca N. Palmer]

Rebecca N. Palmer pushed to branch master at Debian Med / snakemake


Commits:
604fd926 by Rebecca N. Palmer at 2020-04-27T12:11:48+01:00
Stop using pytest-xdist: it sometimes starts tests from a non-main thread, which breaks snakemake.

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2edfcb5f by Rebecca N. Palmer at 2020-04-27T12:17:54+01:00
New upstream version 5.15.0
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e384c90a by Rebecca N. Palmer at 2020-04-27T12:18:08+01:00
Update upstream source from tag 'upstream/5.15.0'

Update to upstream version '5.15.0'
with Debian dir 422f6d6ab1f85b4dfdf1676ff783222e756c8f3f
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9d7dbfdc by Rebecca N. Palmer at 2020-04-27T15:34:25+01:00
Drop patches applied upstream, refresh patch

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9667f24a by Rebecca N. Palmer at 2020-04-27T15:59:34+01:00
add missing test-dependency

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30 changed files:

- CHANGELOG.rst
- debian/changelog
- debian/control
- − debian/patches/bug322_cluster_sync.patch
- − debian/patches/link_security.patch
- debian/patches/python3.patch
- debian/patches/series
- debian/rules
- debian/tests/control
- debian/tests/run-unit-test
- docs/Makefile
- docs/executing/cluster-cloud.rst
- docs/executing/interoperability.rst
- docs/index.rst
- docs/project_info/citations.rst
- docs/project_info/faq.rst
- docs/project_info/more_resources.rst
- docs/snakefiles/configuration.rst
- docs/snakefiles/deployment.rst
- docs/snakefiles/modularization.rst
- docs/snakefiles/remote_files.rst
- docs/snakefiles/reporting.rst
- docs/snakefiles/rules.rst
- docs/tutorial/additional_features.rst
- docs/tutorial/advanced.rst
- docs/tutorial/basics.rst
- docs/tutorial/setup.rst
- docs/tutorial/short.rst
- docs/tutorial/tutorial.rst
- snakemake/__init__.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/116d971394c8065ef63bafde4ecc82582af942d1...9667f24ac33e6204cd6801693ca496db43c21384

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View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/116d971394c8065ef63bafde4ecc82582af942d1...9667f24ac33e6204cd6801693ca496db43c21384
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