[med-svn] [Git][med-team/parsinsert][master] 15 commits: New changelog
gleisson joaquim
gitlab at salsa.debian.org
Wed Aug 5 14:51:25 BST 2020
gleisson joaquim pushed to branch master at Debian Med / parsinsert
Commits:
117a55df by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:32:09-03:00
New changelog
- - - - -
7523ed95 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:35:30-03:00
Bumped Std-Vrs to 4.5.0
- - - - -
f0c94918 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:42:28-03:00
Added Rules-Requires-Root
- - - - -
713ba457 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:44:38-03:00
Run wrap-and-sort
- - - - -
b8b4ef26 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T18:58:15-03:00
Bumped DH to 13
- - - - -
94dd8903 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:17:46-03:00
Added DEP12 upstream metadata
- - - - -
e09bf9ab by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:28:30-03:00
Renamed all patches
- - - - -
84c7ba1c by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:35:15-03:00
(010) Added Last-Update field to header
- - - - -
1ff9a68a by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:39:09-03:00
Refreshed patches
- - - - -
393286a3 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T20:25:14-03:00
Fowarded all patches to upstream
- - - - -
4c0ad37e by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T20:32:50-03:00
Overrinding lintian about manpage
- - - - -
9ec19dda by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:35:53-03:00
Fix duplicate files with same contents
- - - - -
34f83663 by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:38:15-03:00
Improved watch
- - - - -
0876de0c by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:43:08-03:00
Added salsa-ci.yml
- - - - -
4b3f25ee by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:44:39-03:00
New version 1.04-8
- - - - -
11 changed files:
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/fix-gcc6.patch → debian/patches/010_fix-gcc6.patch
- debian/patches/hardening.patch → debian/patches/020_hardening.patch
- debian/patches/series
- debian/rules
- + debian/salsa-ci.yml
- + debian/source/lintian-overrides
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,29 @@
+parsinsert (1.04-8) UNRELEASED; urgency=medium
+
+ * Run wrap-and-sort.
+ * debian/control:
+ - Added 'Rules-Requires-Root: no' to source stanza.
+ - Bumped debhelper-compat to 13.
+ - Bumped Standards-Version to 4.5.0.
+ * debian/patches:
+ - All patches forwarded upstream.
+ - Refreshed all patches.
+ - Renamed all patches.
+ - 010_fix-gcc6.patch: added Last-Update field to header.
+ * debian/rules:
+ - Added a override_dh_link using jdupes to replace the result file with
+ the same content to softlinks. Consequently:
+ ~ debian/control: added jdupes to Build-Depends field.
+ * debian/salsa-ci.yml: added to provide CI tests for Salsa.
+ * debian/source/lintian-overrides: created to override a message about
+ manpage, as requested by lintian.
+ * debian/upstream/metadata: added DEP-12 upstream metadata fields.
+ * debian/watch:$
+ - Bumped version to 4.$
+ - Used special strings instead of regex to improve the search.
+
+ -- Gleisson Jesuino Joaquim Cardoso <gleissoncg2 at gmail.com> Wed, 05 Aug 2020 10:43:49 -0300
+
parsinsert (1.04-7) unstable; urgency=medium
[ Chris Lamb ]
=====================================
debian/control
=====================================
@@ -1,19 +1,18 @@
Source: parsinsert
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
- Andreas Tille <tille at debian.org>
+Uploaders: Tim Booth <tbooth at ceh.ac.uk>, Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12)
-Standards-Version: 4.4.1
+Build-Depends: debhelper-compat (= 13), jdupes
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/parsinsert
Vcs-Git: https://salsa.debian.org/med-team/parsinsert.git
Homepage: http://sourceforge.net/projects/parsinsert/
+Rules-Requires-Root: no
Package: parsinsert
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Depends: ${misc:Depends}, ${shlibs:Depends}
Suggests: parsinsert-testdata
Description: Parsimonious Insertion of unclassified sequences into phylogenetic trees
ParsInsert efficiently produces both a phylogenetic tree and taxonomic
=====================================
debian/copyright
=====================================
@@ -24,4 +24,3 @@ License: GPL-3+
Files: debian/*
Copyright: © 2014 Tim Booth <tbooth at ceh.ac.uk>
License: GPL-3+
-
=====================================
debian/patches/fix-gcc6.patch → debian/patches/010_fix-gcc6.patch
=====================================
@@ -1,9 +1,14 @@
Description: fix building on GCC 6
Use correct initialization for char* array.
+Forwarded: https://sourceforge.net/p/parsinsert/bugs/2/
Author: Sascha Steinbiss <sascha at steinbiss.name>
---- a/ParsInsert.cpp
-+++ b/ParsInsert.cpp
-@@ -95,7 +95,7 @@
+Last-Update: 2016-05-14
+
+Index: parsinsert/ParsInsert.cpp
+===================================================================
+--- parsinsert.orig/ParsInsert.cpp
++++ parsinsert/ParsInsert.cpp
+@@ -95,7 +95,7 @@ char *treeFilename = "P
char *seqFilename = "PI_Tree.fasta";
char *fullTreeName = NULL;
=====================================
debian/patches/hardening.patch → debian/patches/020_hardening.patch
=====================================
@@ -1,9 +1,12 @@
+Description: Propagate hardening options
+Forwarded: https://sourceforge.net/p/parsinsert/bugs/3/
Author: Andreas Tille <tille at debian.org>
Last-Update: Thu, 27 Feb 2014 16:50:26 +0000
-Description: Propagate hardening options
---- a/makefile
-+++ b/makefile
+Index: parsinsert/makefile
+===================================================================
+--- parsinsert.orig/makefile
++++ parsinsert/makefile
@@ -9,15 +9,15 @@
PROGRAM = ParsInsert
OBJECTS = AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o
@@ -23,7 +26,7 @@ Description: Propagate hardening options
all: $(PROGRAM)
-@@ -26,12 +26,12 @@
+@@ -26,12 +26,12 @@ clean:
TEST_OBJECTS = PNode.o AttrList.o Knox_Stddef.o Test.o
test: $(TEST_OBJECTS)
=====================================
debian/patches/series
=====================================
@@ -1,2 +1,2 @@
-hardening.patch
-fix-gcc6.patch
+010_fix-gcc6.patch
+020_hardening.patch
=====================================
debian/rules
=====================================
@@ -33,3 +33,7 @@ endif
override_dh_install:
dh_install -Xset1000.log
+
+override_dh_link:
+ dh_link
+ jdupes -rl debian/parsinsert-testdata/usr
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1,4 @@
+# Manpage file was sent to upstream.
+# See https://sourceforge.net/p/parsinsert/bugs/4/
+# Overriding as requested by lintian.
+parsinsert source: maintainer-manual-page debian/parsinsert.1
=====================================
debian/upstream/metadata
=====================================
@@ -6,3 +6,7 @@ Registry:
- Name: bio.tools
Entry: NA
Archive: SourceForge
+Bug-Database: https://sourceforge.net/p/parsinsert/bugs/
+Bug-Submit: https://sourceforge.net/p/parsinsert/bugs/new
+Repository: https://sourceforge.net/projects/parsinsert/files/latest/download
+Repository-Browse: https://sourceforge.net/projects/parsinsert/files/
=====================================
debian/watch
=====================================
@@ -1,2 +1,2 @@
-version=3
-https://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz
+version=4
+https://sf.net/parsinsert/ ParsInsert. at ANY_VERSION@@ARCHIVE_EXT@
View it on GitLab: https://salsa.debian.org/med-team/parsinsert/-/compare/f431af482e892d321e8f4690bc5eee4eaae2da4a...4b3f25eef373fce896014e177f1baafe1896af37
--
View it on GitLab: https://salsa.debian.org/med-team/parsinsert/-/compare/f431af482e892d321e8f4690bc5eee4eaae2da4a...4b3f25eef373fce896014e177f1baafe1896af37
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