[med-svn] [Git][med-team/trinityrnaseq][master] 16 commits: Fix gcc-10 build issue

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / trinityrnaseq


Commits:
13d005c5 by Andreas Tille at 2020-08-05T12:47:31+02:00
Fix gcc-10 build issue

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ece6e42c by Andreas Tille at 2020-08-05T12:56:19+02:00
routine-update: New upstream version

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c7463370 by Andreas Tille at 2020-08-05T12:56:34+02:00
New upstream version 2.11.0+dfsg
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f3d13e15 by Andreas Tille at 2020-08-05T13:02:44+02:00
Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir 60247192462fedb615822b8e49e12b043c309e64
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ec6e4917 by Andreas Tille at 2020-08-05T13:02:46+02:00
routine-update: debhelper-compat 13

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483b0895 by Andreas Tille at 2020-08-05T13:33:23+02:00
Adapt patches

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4f6ba3fe by Andreas Tille at 2020-08-05T13:40:12+02:00
Review Files-Excluded for moved and removed files as well as new binary *.jars

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7150f569 by Andreas Tille at 2020-08-05T13:40:43+02:00
Remove redundant debian/gbp.conf

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15965297 by Andreas Tille at 2020-08-05T13:50:46+02:00
New upstream version 2.11.0+dfsg
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26fc1729 by Andreas Tille at 2020-08-05T13:55:05+02:00
Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir e608f7e9ef67b323c97fab82f1d95cb9142fcc24
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bd24bf69 by Andreas Tille at 2020-08-05T14:55:47+02:00
Remove __pycache__ from installed package

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915d8883 by Andreas Tille at 2020-08-05T15:00:45+02:00
More Python3 porting needed

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f14d07c7 by Andreas Tille at 2020-08-05T15:01:05+02:00
Remove more binary code from upstream source

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0d1d8e6c by Andreas Tille at 2020-08-05T15:49:37+02:00
New upstream version 2.11.0+dfsg
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449ca8fa by Andreas Tille at 2020-08-05T15:53:52+02:00
Update upstream source from tag 'upstream/2.11.0+dfsg'

Update to upstream version '2.11.0+dfsg'
with Debian dir 8971919319e287bc0b6c7a7ce583e6d7f5b260ec
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0d455157 by Andreas Tille at 2020-08-05T16:31:12+02:00
FIXME: seqtk-trinity is missing and thus autopkgtest fails

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30 changed files:

- .gitmodules
- Analysis/DifferentialExpression/PtR
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- + Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_partial.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_pruner.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Compact_graph_whole.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/DP_matrix.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Gene_splice_modeler.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/GraphCycleException.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Node_alignment.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Node_path.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Splice_model_refiner.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/TGLOBALS.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/TGraph.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/TNode.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Topological_sort.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Trinity_fasta_parser.cpython-36.pyc
- + Analysis/SuperTranscripts/pylib/__pycache__/Trinity_util.cpython-36.pyc
- + Butterfly/Butterfly/README.md
- + Butterfly/Butterfly/src/.classpath
- + Butterfly/Butterfly/src/.err
- + Butterfly/Butterfly/src/.project
- + Butterfly/Butterfly/src/.settings/org.eclipse.jdt.core.prefs
- + Butterfly/Butterfly/src/README
- + Butterfly/Butterfly/src/_t_seqA.fa
- + Butterfly/Butterfly/src/_t_seqB.fa
- + Butterfly/Butterfly/src/build.xml
- + Butterfly/Butterfly/src/runExample.sh
- + Butterfly/Butterfly/src/run_NWalign.sh
- + Butterfly/Butterfly/src/run_butterfly_nonJar.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/f915893af3ba3736372603cfb5865d52728bb98c...0d455157ba524208cb84b6d9b8d17a1756d6ce40

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/f915893af3ba3736372603cfb5865d52728bb98c...0d455157ba524208cb84b6d9b8d17a1756d6ce40
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