[med-svn] [Git][med-team/librostlab-blast][master] 12 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille
gitlab at salsa.debian.org
Fri Dec 4 22:35:49 GMT 2020
Andreas Tille pushed to branch master at Debian Med / librostlab-blast
Commits:
1df7072a by Andreas Tille at 2020-12-04T23:19:53+01:00
routine-update: Standards-Version: 4.5.1
- - - - -
8cf5bc27 by Andreas Tille at 2020-12-04T23:19:53+01:00
routine-update: debhelper-compat 13
- - - - -
63ac2236 by Andreas Tille at 2020-12-04T23:20:03+01:00
routine-update: Secure URI in copyright format
- - - - -
084e7200 by Andreas Tille at 2020-12-04T23:20:03+01:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
d78c1b96 by Andreas Tille at 2020-12-04T23:20:03+01:00
routine-update: Remove trailing whitespace in debian/copyright
- - - - -
f0976827 by Andreas Tille at 2020-12-04T23:20:03+01:00
routine-update: Add salsa-ci file
- - - - -
40be610c by Andreas Tille at 2020-12-04T23:20:03+01:00
routine-update: Rules-Requires-Root: no
- - - - -
83643253 by Andreas Tille at 2020-12-04T23:20:05+01:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
f56c37c2 by Andreas Tille at 2020-12-04T23:20:07+01:00
Set upstream metadata fields: Bug-Submit (from ./configure).
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
- - - - -
20e58b93 by Andreas Tille at 2020-12-04T23:20:07+01:00
Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html
- - - - -
b094d635 by Andreas Tille at 2020-12-04T23:29:14+01:00
dh_missing --fail-missing friendly installation
- - - - -
ba910fcf by Andreas Tille at 2020-12-04T23:35:31+01:00
Add autopkgtest error as TODO
- - - - -
9 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/librostlab-blast0-dev.examples
- debian/rules
- + debian/salsa-ci.yml
- debian/tests/installation-test
- + debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,37 @@
+librostlab-blast (1.0.1-11) UNRELEASED; urgency=medium
+
+ * Standards-Version: 4.5.1 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Secure URI in copyright format (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Remove trailing whitespace in debian/copyright (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Use secure URI in Homepage field.
+ * Set upstream metadata fields: Bug-Submit (from ./configure).
+ * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
+ * dh_missing --fail-missing friendly installation
+ TODO:
+autopkgtest [22:31:34]: test installation-test: [-----------------------
+Compile and run...
+In file included from parseblast.cpp:2:
+/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace
+ 61 | friend YY_DECL_FRIEND;
+ | ^~~~~~~~~~~~~~
+autopkgtest [22:31:35]: test installation-test: -----------------------]
+autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - results - - - - - - - - - -
+installation-test FAIL non-zero exit status 1
+autopkgtest [22:31:35]: test installation-test: - - - - - - - - - - stderr - - - - - - - - - -
+In file included from parseblast.cpp:2:
+/usr/include/rostlab/blast-parser-driver.h:61:12: error: ‘enum rostlab::blast::parser::token::token_kind_type’ is not a class or namespace
+ 61 | friend YY_DECL_FRIEND;
+ | ^~~~~~~~~~~~~~
+autopkgtest [22:31:35]: @@@@@@@@@@@@@@@@@@@@ summary
+installation-test FAIL non-zero exit status 1
+
+
+ -- Andreas Tille <tille at debian.org> Fri, 04 Dec 2020 23:19:53 +0100
+
librostlab-blast (1.0.1-10) unstable; urgency=medium
* Do not render PDF documentation any more since its not really important
@@ -108,7 +142,7 @@ librostlab-blast (1.0.0-3) unstable; urgency=low
librostlab-blast (1.0.0-2) unstable; urgency=low
- * Added missing librostlab3-dev dependency to librostlab-blast0-dev.
+ * Added missing librostlab3-dev dependency to librostlab-blast0-dev.
* Mention libzerg in package description.
-- Laszlo Kajan <lkajan at rostlab.org> Wed, 04 Apr 2012 10:57:21 +0200
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Laszlo Kajan <lkajan at rostlab.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
d-shlibs,
bison,
doxygen,
@@ -14,10 +14,11 @@ Build-Depends: debhelper (>= 11~),
librostlab-dev,
texlive-fonts-recommended,
texlive-latex-extra
-Standards-Version: 4.3.0
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast
Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git
-Homepage: http://rostlab.org/
+Homepage: https://rostlab.org/
+Rules-Requires-Root: no
Package: librostlab-blast0v5
Architecture: any
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: librostlab-blast
Upstream-Contact: Laszlo Kajan <lkajan at rostlab.org>
Source: http://rostlab.org/
@@ -16,12 +16,12 @@ License: GPL-3+
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
- .
+ .
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
- .
+ .
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
.
@@ -33,12 +33,12 @@ License: LGPL-3+
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
- .
+ .
This package is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
- .
+ .
You should have received a copy of the GNU Lesser General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
.
=====================================
debian/librostlab-blast0-dev.examples
=====================================
@@ -1,2 +1 @@
-examples/parseblast.cpp
-examples/converged.ali
+usr/share/doc/librostlab-blast/examples/*
=====================================
debian/rules
=====================================
@@ -17,6 +17,7 @@ override_dh_install:
--v5 \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
+ find debian -name "lib*.la" -delete
override_dh_auto_configure:
dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/tests/installation-test
=====================================
@@ -6,12 +6,12 @@ set -e
pkg=librostlab-blast0-dev
-if [ "$ADTTMP" = "" ] ; then
- ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
- trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
find . -type f -name "*.gz" -exec gunzip \{\} \;
=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,2 @@
+---
+Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=librostlab-blast
View it on GitLab: https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f
--
View it on GitLab: https://salsa.debian.org/med-team/librostlab-blast/-/compare/eb2f017790bc2a94feca45ab81c4bbb90d4e2b5c...ba910fcfeeefefe05480533d46b5f490ecace13f
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