Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d16bfe76 by Andreas Tille at 2020-12-07T13:52:48+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
+Last-Update: Mon, 07 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 188 | {covid-19,imaging} |
- orthanc | 100 | {covid-19,imaging,practice} |
- orthanc-wsi | 50 | {his,imaging,practice,oncology,laboratory,covid-19} |
+ orthanc | 100 | {imaging,covid-19,practice} |
+ orthanc-wsi | 50 | {imaging,covid-19,oncology,laboratory,his,practice} |
gdcm | 36 | {imaging-dev} |
htsjdk | 30 | {bio-dev} |
dicom3tools | 23 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
+ gdcm | 21 | {imaging,covid-19} |
dcm2niix | 20 | {imaging} |
dicomscope | 19 | {imaging} |
adun.app | 17 | {bio} |
ngs-sdk | 17 | {bio-dev} |
- gnumed-server | 16 | {practice,covid-19} |
+ gnumed-server | 16 | {covid-19,practice} |
nifticlib | 16 | {imaging} |
gdcm | 14 | {imaging-dev} |
invesalius | 14 | {imaging} |
@@ -29,18 +29,20 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
orthanc-webviewer | 9 | {imaging} |
plastimatch | 9 | {imaging} |
jebl2 | 8 | {bio-dev} |
- king | 8 | {typesetting,imaging} |
- melting | 8 | {bio,cloud} |
- salmon | 8 | {covid-19,bio} |
+ king | 8 | {imaging,typesetting} |
+ melting | 8 | {cloud,bio} |
+ nifti2dicom | 8 | {imaging} |
+ salmon | 8 | {bio,covid-19} |
seqsero | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
fastlink | 7 | {cloud,bio} |
+ nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
staden | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
- arden | 6 | {bio,cloud} |
- bamkit | 6 | {bio,covid-19} |
+ arden | 6 | {cloud,bio} |
+ bamkit | 6 | {covid-19,bio} |
bart-view | 6 | {imaging} |
dicompyler | 6 | {oncology} |
libncl | 6 | {bio} |
@@ -49,20 +51,20 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
orthanc-postgresql | 6 | {imaging} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
- anfo | 5 | {bio,cloud} |
+ anfo | 5 | {cloud,bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
bio-tradis | 5 | {bio,bio-dev} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domalign | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {cloud,bio} |
getdata | 5 | {bio} |
ipig | 5 | {bio} |
- jmodeltest | 5 | {bio,bio-phylogeny} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
metaphlan2 | 5 | {bio} |
- mipe | 5 | {bio,cloud} |
- multiqc | 5 | {bio,covid-19} |
+ mipe | 5 | {cloud,bio} |
+ multiqc | 5 | {covid-19,bio} |
obitools | 5 | {bio} |
paraclu | 5 | {cloud,bio} |
phybin | 5 | {bio} |
@@ -72,7 +74,7 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
spaced | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
tracetuner | 5 | {bio} |
zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
@@ -81,7 +83,7 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
brig | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
- embassy-domsearch | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
ghmm | 4 | {bio} |
@@ -102,36 +104,37 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
sga | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
+ sibsim4 | 4 | {bio,cloud} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
biomaj3-daemon | 3 | {bio} |
- busco | 3 | {covid-19,bio} |
+ busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
hinge | 3 | {bio} |
jellyfish1 | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
- proalign | 3 | {bio-phylogeny,bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ proalign | 3 | {bio,bio-phylogeny} |
rtax | 3 | {bio,cloud} |
+ salmid | 3 | {bio} |
sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
suitename | 3 | {bio} |
yaha | 3 | {bio} |
- biosig | 2 | {imaging-dev,physics} |
- blasr | 2 | {bio-ngs,bio} |
+ biosig | 2 | {physics,imaging-dev} |
+ blasr | 2 | {bio,bio-ngs} |
emboss-explorer | 2 | {bio} |
gatb-core | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- oscar | 2 | {tools,practice,data} |
+ oscar | 2 | {data,tools,practice} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
+ samblaster | 2 | {covid-19,bio} |
segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
simpleitk | 2 | {imaging-dev} |
@@ -139,9 +142,9 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
acedb | 1 | {bio,cloud} |
bambamc | 1 | {bio-dev} |
bbmap | 1 | {bio,covid-19} |
- biosig | 1 | {physics,imaging-dev} |
+ biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
delly | 1 | {covid-19,bio} |
gatb-core | 1 | {bio-dev} |
@@ -186,10 +189,10 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
- dextractor | 0 | {bio,covid-19} |
+ dextractor | 0 | {covid-19,bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -203,8 +206,8 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
- nanosv | 0 | {bio,covid-19} |
+ milib | 0 | {bio-dev,covid-19} |
+ nanosv | 0 | {covid-19,bio} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
@@ -214,9 +217,11 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
pilercr | 0 | {bio} |
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio-phylogeny,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2templates | 0 | {bio,bio-dev} |
+ resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {bio,covid-19} |
@@ -226,15 +231,17 @@ Last-Update: Mon, 07 Dec 2020 01:42:04 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- yanagiba | 0 | {bio,covid-19} |
+ yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
+ orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
+ q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(264 rows)
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d16bfe765edad3bfceb28fa01d8ced39afd8c4d2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d16bfe765edad3bfceb28fa01d8ced39afd8c4d2
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