Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6a88546c by Andreas Tille at 2020-12-08T13:45:37+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,30 +1,30 @@
-Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
+Last-Update: Tue, 08 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 188 | {covid-19,imaging} |
- orthanc | 100 | {imaging,covid-19,practice} |
- orthanc-wsi | 50 | {imaging,covid-19,oncology,laboratory,his,practice} |
- gdcm | 36 | {imaging-dev} |
- htsjdk | 30 | {bio-dev} |
+ orthanc | 101 | {imaging,covid-19,practice} |
+ orthanc-wsi | 52 | {imaging,covid-19,oncology,laboratory,his,practice} |
+ gdcm | 35 | {imaging-dev} |
+ htsjdk | 31 | {bio-dev} |
dicom3tools | 23 | {imaging} |
gdcm | 21 | {imaging,covid-19} |
dcm2niix | 20 | {imaging} |
- dicomscope | 19 | {imaging} |
- adun.app | 17 | {bio} |
+ dicomscope | 20 | {imaging} |
ngs-sdk | 17 | {bio-dev} |
+ nifticlib | 17 | {imaging} |
+ adun.app | 16 | {bio} |
gnumed-server | 16 | {covid-19,practice} |
- nifticlib | 16 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- invesalius | 14 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
+ invesalius | 15 | {imaging} |
minc-tools | 14 | {imaging} |
- nifticlib | 12 | {imaging-dev} |
+ ngs-sdk | 11 | {bio-dev} |
ngs-sdk | 10 | {bio-dev} |
+ nifticlib | 10 | {imaging-dev} |
openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
- insighttoolkit4 | 9 | {imaging-dev} |
librg-utils-perl | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
plastimatch | 9 | {imaging} |
@@ -35,25 +35,28 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
salmon | 8 | {bio,covid-19} |
seqsero | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
+ bamkit | 7 | {covid-19,bio} |
biojava-live | 7 | {bio-dev} |
fastlink | 7 | {cloud,bio} |
+ insighttoolkit4 | 7 | {imaging-dev} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
+ pymia | 7 | {imaging-dev} |
staden | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
arden | 6 | {cloud,bio} |
- bamkit | 6 | {covid-19,bio} |
bart-view | 6 | {imaging} |
- dicompyler | 6 | {oncology} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
+ obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
- pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
anfo | 5 | {cloud,bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
+ biomaj3-cli | 5 | {cloud} |
bio-tradis | 5 | {bio,bio-dev} |
+ dicompyler | 5 | {oncology} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {bio,cloud} |
@@ -64,8 +67,6 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
libdivsufsort | 5 | {bio-dev} |
metaphlan2 | 5 | {bio} |
mipe | 5 | {cloud,bio} |
- multiqc | 5 | {covid-19,bio} |
- obitools | 5 | {bio} |
paraclu | 5 | {cloud,bio} |
phybin | 5 | {bio} |
placnet | 5 | {bio} |
@@ -78,7 +79,7 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
tracetuner | 5 | {bio} |
zalign | 5 | {cloud,bio} |
assemblytics | 4 | {bio} |
- biomaj3-cli | 4 | {cloud} |
+ biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
@@ -108,7 +109,6 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
sprai | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
- biomaj3-daemon | 3 | {bio} |
busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
dindel | 3 | {bio} |
@@ -119,7 +119,6 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
proalign | 3 | {bio,bio-phylogeny} |
rtax | 3 | {bio,cloud} |
salmid | 3 | {bio} |
- sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
suitename | 3 | {bio} |
@@ -128,15 +127,18 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
blasr | 2 | {bio,bio-ngs} |
emboss-explorer | 2 | {bio} |
gatb-core | 2 | {bio} |
+ gifticlib | 2 | {imaging-dev} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
+ multiqc | 2 | {covid-19,bio} |
oscar | 2 | {data,tools,practice} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {covid-19,bio} |
segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
+ sight | 2 | {imaging} |
simpleitk | 2 | {imaging-dev} |
tvc | 2 | {bio} |
acedb | 1 | {bio,cloud} |
@@ -144,9 +146,9 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
bbmap | 1 | {bio,covid-19} |
biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
delly | 1 | {covid-19,bio} |
+ emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
intake | 1 | {bio,bio-dev} |
libbpp-core | 1 | {bio-dev} |
@@ -188,9 +190,9 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
+ cat-bat | 0 | {bio,covid-19} |
cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {covid-19,bio} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {bio-dev,covid-19} |
kmerresistance | 0 | {bio} |
@@ -218,8 +220,8 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio-phylogeny,bio} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2templates | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -243,5 +245,5 @@ Last-Update: Tue, 08 Dec 2020 01:42:03 +0000
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(272 rows)
+(274 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6a88546c92390416e8a24e1b4b56947486d1a67d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6a88546c92390416e8a24e1b4b56947486d1a67d
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