[med-svn] [Git][med-team/seqmagick][master] 8 commits: New upstream version 0.8.4

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / seqmagick


Commits:
4a086172 by Étienne Mollier at 2020-12-09T14:27:02+01:00
New upstream version 0.8.4
- - - - -
61c1fa50 by Étienne Mollier at 2020-12-09T14:27:02+01:00
routine-update: New upstream version

- - - - -
cc3e23fa by Étienne Mollier at 2020-12-09T14:27:04+01:00
Update upstream source from tag 'upstream/0.8.4'

Update to upstream version '0.8.4'
with Debian dir 9fe2b35544f8b9ba79bbc2ba28b9b74830de82c6
- - - - -
efa1dc56 by Étienne Mollier at 2020-12-09T14:27:04+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
28113579 by Étienne Mollier at 2020-12-09T14:27:40+01:00
routine-update: Ready to upload to unstable

- - - - -
880f2852 by Étienne Mollier at 2020-12-09T14:35:28+01:00
More verbose autopkgtest

- - - - -
334b79ad by Étienne Mollier at 2020-12-09T14:36:51+01:00
run against the test selected by the for loop

- - - - -
23547e9b by Étienne Mollier at 2020-12-09T14:41:19+01:00
d/changelog: record minor change to autopkgtest

- - - - -


7 changed files:

- README.rst
- debian/changelog
- debian/control
- debian/tests/run-unit-test
- requirements-rtd.txt
- requirements.txt
- setup.py


Changes:

=====================================
README.rst
=====================================
@@ -20,7 +20,7 @@ Requirements
 ============
 
 * Python >= 3.5
-* biopython >= 1.70
+* biopython >= 1.78
 
 Installation
 ============


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+seqmagick (0.8.4-1) unstable; urgency=medium
+
+  * New upstream version
+  * Standards-Version: 4.5.1 (routine-update)
+  * More verbose autopkgtest and minor fix in case several shell scripts are in
+    the same directory in the future.
+
+ -- Étienne Mollier <etienne.mollier at mailoo.org>  Wed, 09 Dec 2020 14:27:08 +0100
+
 seqmagick (0.8.2-1) unstable; urgency=medium
 
   * Add myself to Uploaders.


=====================================
debian/control
=====================================
@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-nose,
                python3-biopython,
                python3-pygtrie
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/seqmagick
 Vcs-Git: https://salsa.debian.org/med-team/seqmagick.git
 Homepage: https://github.com/fhcrc/seqmagick/


=====================================
debian/tests/run-unit-test
=====================================
@@ -13,10 +13,11 @@ cp ${TEST_DIR}/examples -a "${AUTOPKGTEST_TMP}"
 cd "${AUTOPKGTEST_TMP}"
 gunzip -r *
 
+set -x
 for f in `find examples/ -name '*.sh'`
 do
 	cd `dirname $f`
-	/bin/bash *.sh
+	/bin/bash `basename $f`
 	cd -
 done
 echo 'PASS'


=====================================
requirements-rtd.txt
=====================================
@@ -1,3 +1,3 @@
-biopython
+biopython>=1.78
+pygtrie>=2.1
 sphinx
-pygtrie


=====================================
requirements.txt
=====================================
@@ -1,5 +1,5 @@
-biopython>=1.70
-pygtrie
+biopython>=1.78
+pygtrie>=2.1
 
 # for development
 wheel


=====================================
setup.py
=====================================
@@ -35,7 +35,7 @@ setup(name='seqmagick',
       setup_requires=['nose>=1.0'],
       python_requires='>=3.5',
       test_suite='nose.collector',
-      install_requires=['biopython>=1.70'],
+      install_requires=['biopython>=1.78', 'pygtrie>=2.1'],
       classifiers=[
           'License :: OSI Approved :: GNU General Public License (GPL)',
           'Development Status :: 4 - Beta',



View it on GitLab: https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba

-- 
View it on GitLab: https://salsa.debian.org/med-team/seqmagick/-/compare/304ee0448f44a2eea0867205f97fab1f82dbbe24...23547e9b2933a29891e86d1941a55922247197ba
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