[med-svn] [Git][med-team/kmc][master] 18 commits: routine-update: New upstream version

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / kmc


Commits:
32303009 by Étienne Mollier at 2020-12-10T19:04:20+01:00
routine-update: New upstream version

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04f09c95 by Étienne Mollier at 2020-12-10T19:04:42+01:00
New upstream version 3.1.1+dfsg
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3ee5a72c by Étienne Mollier at 2020-12-10T19:04:43+01:00
Update upstream source from tag 'upstream/3.1.1+dfsg'

Update to upstream version '3.1.1+dfsg'
with Debian dir bd0edbf230bd4e87026951567e49316a789b5d64
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ae95d101 by Étienne Mollier at 2020-12-10T19:19:59+01:00
begin removal of refs to asmlib

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106ef89a by Étienne Mollier at 2020-12-10T19:24:47+01:00
Refresh use-shared-libs patch

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8d8c99db by Étienne Mollier at 2020-12-10T19:47:32+01:00
Fold patches to makefile into makefile.patch

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bdbfaf39 by Étienne Mollier at 2020-12-10T19:55:48+01:00
Refresh 0005-Add-static-library-target-to-makefile.patch

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5e15a770 by Étienne Mollier at 2020-12-10T20:03:21+01:00
Deleted spelling patch

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5a8c5c32 by Étienne Mollier at 2020-12-10T20:04:49+01:00
Refresh patch newish_gcc_build_fix.patch

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f8352853 by Étienne Mollier at 2020-12-10T20:06:40+01:00
Removed patch cap-default-thread-count.patch

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ba198fad by Étienne Mollier at 2020-12-10T20:09:02+01:00
Activated highly threaded test in autopkgtest

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515584f7 by Étienne Mollier at 2020-12-10T20:28:30+01:00
remove extra linker options

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46c1e49e by Étienne Mollier at 2020-12-10T20:31:28+01:00
Disable the newer python3 bindings

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cb6788f7 by Étienne Mollier at 2020-12-10T21:32:20+01:00
general build flags cleanup

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760fe6ea by Étienne Mollier at 2020-12-10T21:34:07+01:00
increase autopkgtest stress to 512 threads

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8ed6d1f3 by Étienne Mollier at 2020-12-10T21:37:19+01:00
Wrote new spelling.patch

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35f92f1d by Étienne Mollier at 2020-12-10T21:44:00+01:00
add dep3 header to disable-python-bindings.patch

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9a41059a by Étienne Mollier at 2020-12-10T22:01:55+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- .gitignore
- README.md
- + debian/TODO
- debian/changelog
- debian/patches/0005-Add-static-library-target-to-makefile.patch
- − debian/patches/0007-Use-standard-compiler-environment-variables.patch
- − debian/patches/cap-default-thread-count.patch
- − debian/patches/disable-asmlib
- + debian/patches/disable-python-bindings.patch
- − debian/patches/hardening
- + debian/patches/makefile.patch
- debian/patches/newish_gcc_build_fix.patch
- debian/patches/series
- − debian/patches/spelling
- + debian/patches/spelling.patch
- debian/patches/use-shared-libs
- debian/tests/build-lib
- + doc/kmc_tools/complex.tex
- + doc/kmc_tools/filter_operation.tex
- + doc/kmc_tools/intro.tex
- + doc/kmc_tools/kmc_tools.tex
- + doc/kmc_tools/simple.tex
- + doc/kmc_tools/transform.tex
- + doc/kmc_tools/usage.tex
- kmc_api/kmc_file.cpp
- kmc_api/kmc_file.h
- kmc_api/kmer_api.cpp
- kmc_api/kmer_api.h
- kmc_api/kmer_defs.h
- kmc_api/mmer.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/34231fb9309ff6967bc1e93a34a0fe6f0d5334b4...9a41059a7180c91896ffc463b4a0256c5defd434

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View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/34231fb9309ff6967bc1e93a34a0fe6f0d5334b4...9a41059a7180c91896ffc463b4a0256c5defd434
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