Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e8c4ba9c by Andreas Tille at 2020-12-20T13:45:51+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,42 +1,42 @@
-Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
+Last-Update: Sun, 20 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 200 | {imaging,covid-19} |
orthanc | 104 | {imaging,covid-19,practice} |
orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 46 | {imaging-dev} |
- htsjdk | 34 | {bio-dev} |
- amide | 30 | {imaging} |
- dicom3tools | 23 | {imaging} |
- dicomscope | 20 | {imaging} |
+ gdcm | 47 | {imaging-dev} |
+ htsjdk | 32 | {bio-dev} |
+ amide | 29 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ dicomscope | 21 | {imaging} |
gnumed-server | 20 | {covid-19,practice} |
- gdcm | 19 | {imaging,covid-19} |
- ngs-sdk | 18 | {bio-dev} |
+ gdcm | 18 | {imaging,covid-19} |
odin | 18 | {imaging-dev,imaging} |
invesalius | 17 | {imaging} |
- dcm2niix | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
+ dcm2niix | 15 | {imaging} |
adun.app | 14 | {bio} |
gdcm | 14 | {imaging-dev} |
- nifticlib | 14 | {imaging} |
dicomnifti | 13 | {imaging} |
minc-tools | 13 | {imaging} |
- mia | 12 | {imaging} |
+ nifticlib | 13 | {imaging} |
+ mia | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
plastimatch | 11 | {imaging} |
ea-utils | 10 | {bio} |
+ insighttoolkit4 | 10 | {imaging-dev} |
king | 10 | {imaging,typesetting} |
librg-utils-perl | 10 | {bio} |
melting | 10 | {bio,cloud} |
- ngs-sdk | 10 | {bio-dev} |
+ obitools | 10 | {bio} |
openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
fastlink | 9 | {bio,cloud} |
- insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
- obitools | 9 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
orthanc-webviewer | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
treeview | 8 | {bio,bio-phylogeny} |
@@ -44,6 +44,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
libpal-java | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
prime-phylo | 7 | {cloud,bio} |
pymia | 7 | {imaging-dev} |
@@ -58,7 +59,6 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
lagan | 6 | {bio} |
libncl | 6 | {bio} |
mipe | 6 | {cloud,bio} |
- nifti2dicom | 6 | {imaging} |
phast | 6 | {bio} |
phybin | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
@@ -68,6 +68,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
bitseq | 5 | {bio} |
+ busco | 5 | {bio,covid-19} |
ecopcr | 5 | {bio} |
ghmm | 5 | {bio} |
ipig | 5 | {bio} |
@@ -85,10 +86,10 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
+ stacks | 5 | {bio} |
assemblytics | 4 | {bio} |
bart-view | 4 | {imaging} |
brig | 4 | {bio} |
- busco | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {bio,cloud} |
@@ -108,9 +109,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
- stacks | 4 | {bio} |
surankco | 4 | {bio} |
- tracetuner | 4 | {bio} |
biomaj3-cli | 3 | {cloud} |
biomaj3-daemon | 3 | {bio} |
blasr | 3 | {bio,bio-ngs} |
@@ -128,6 +127,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
rtax | 3 | {cloud,bio} |
soapaligner | 3 | {bio} |
suitename | 3 | {bio} |
+ tracetuner | 3 | {bio} |
yaha | 3 | {bio} |
blimps | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -221,8 +221,8 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -241,11 +241,12 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
+ xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(277 rows)
+(278 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e8c4ba9ccb7d1260847d4c4386f1f76195edadfb
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e8c4ba9ccb7d1260847d4c4386f1f76195edadfb
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