[med-svn] [Git][med-team/augustus][master] 8 commits: routine-update: New upstream version

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / augustus


Commits:
76f4e72d by Steffen Moeller at 2020-12-22T17:56:13+01:00
routine-update: New upstream version

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d6d05ec1 by Steffen Moeller at 2020-12-22T17:56:24+01:00
New upstream version 3.4.0+dfsg
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95fbccb4 by Steffen Moeller at 2020-12-22T18:02:17+01:00
Update upstream source from tag 'upstream/3.4.0+dfsg'

Update to upstream version '3.4.0+dfsg'
with Debian dir 8cb34729c78c01a752d94b4a17208a9970eb6c69
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dfd3b1f0 by Steffen Moeller at 2020-12-22T18:02:18+01:00
routine-update: Standards-Version: 4.5.1

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5acca058 by Steffen Moeller at 2020-12-22T18:02:21+01:00
routine-update: Add salsa-ci file

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f842a4b0 by Steffen Moeller at 2020-12-22T18:02:31+01:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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c8774226 by Steffen Moeller at 2020-12-22T18:02:37+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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f6b3fb3b by Steffen Moeller at 2020-12-23T22:24:24+01:00
Upstream adopted quite a bit.

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30 changed files:

- + .dockerignore
- + .github/workflows/examples_test.yml
- + .github/workflows/execute_nightly_tests.yml
- .gitignore
- .travis.yml
- Dockerfile
- − Dockerfile-cgp-file
- − Dockerfile-cgp-mysql
- − Dockerfile-cgp-sqlite
- Makefile
- README.md
- auxprogs/Makefile
- auxprogs/aln2wig/Makefile
- auxprogs/bam2hints/Makefile
- auxprogs/bam2wig/Makefile
- + auxprogs/bam2wig/README.md
- − auxprogs/bam2wig/README.txt
- auxprogs/bam2wig/bam2wig.c
- − auxprogs/checkTargetSortedness/Makefile
- − auxprogs/checkTargetSortedness/checkTargetSortedness.c
- auxprogs/compileSpliceCands/Makefile
- auxprogs/compileSpliceCands/compileSpliceCands.c
- auxprogs/filterBam/src/Makefile
- + auxprogs/homGeneMapping/Dockerfile
- auxprogs/homGeneMapping/Makefile
- auxprogs/homGeneMapping/README.TXT
- − auxprogs/homGeneMapping/examples/make.doc
- auxprogs/homGeneMapping/include/genome.hh
- auxprogs/homGeneMapping/src/Makefile
- auxprogs/homGeneMapping/src/genome.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/872bc0cde337d6114f0c8ad2d9df227a6a7ae549...f6b3fb3b199d4dd23b41246b6b5b62ff739d9acd

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View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/872bc0cde337d6114f0c8ad2d9df227a6a7ae549...f6b3fb3b199d4dd23b41246b6b5b62ff739d9acd
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