[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.0

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
99a638ad by Steffen Moeller at 2020-02-13T18:28:47+01:00
New upstream version 1.2.0
- - - - -


30 changed files:

- HISTORY.md
- README.rst
- bcbio/chipseq/__init__.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/cwl/hpc.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/install.py
- bcbio/ngsalign/star.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/main.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sra.py
- bcbio/provenance/system.py
- + bcbio/qc/atac.py
- bcbio/qc/chipseq.py
- bcbio/qc/multiqc.py
- bcbio/qc/variant.py
- bcbio/rnaseq/arriba.py
- bcbio/rnaseq/bcbiornaseq.py
- bcbio/rnaseq/gtf.py
- bcbio/rnaseq/salmon.py
- bcbio/structural/lumpy.py
- bcbio/upload/__init__.py
- bcbio/variation/coverage.py
- bcbio/variation/gatkjoint.py
- bcbio/variation/peddy.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/99a638ad65170192d5f54dec9e9ae5089aafe494

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/99a638ad65170192d5f54dec9e9ae5089aafe494
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200225/3f096a83/attachment.html>