[med-svn] [Git][med-team/bcbio][master] 10 commits: routine-update: New upstream version

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
557a7097 by Steffen Moeller at 2020-02-13T18:28:46+01:00
routine-update: New upstream version

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99a638ad by Steffen Moeller at 2020-02-13T18:28:47+01:00
New upstream version 1.2.0
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bb00ca14 by Steffen Moeller at 2020-02-13T18:29:47+01:00
Update upstream source from tag 'upstream/1.2.0'

Update to upstream version '1.2.0'
with Debian dir cf614210b0eb5077add95797c3b0b4653694cfad
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5b2d838e by Steffen Moeller at 2020-02-13T18:29:48+01:00
routine-update: debhelper-compat 12

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8ef4b991 by Steffen Moeller at 2020-02-13T18:29:57+01:00
R-U: Trailing whitespace in debian/changelog

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7bdd850f by Steffen Moeller at 2020-02-13T18:29:58+01:00
R-U: Trailing whitespace in debian/copyright

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96a48ef0 by Steffen Moeller at 2020-02-13T18:29:58+01:00
R-U: Trailing whitespace in debian/rules

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08acd416 by Steffen Moeller at 2020-02-13T18:30:03+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
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09fd5891 by Steffen Moeller at 2020-02-25T17:20:52+01:00
Preparing upload.

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b5b9b7df by Steffen Moeller at 2020-02-25T17:23:36+01:00
Merge branch 'master' of salsa.debian.org:med-team/bcbio

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30 changed files:

- HISTORY.md
- README.rst
- bcbio/chipseq/__init__.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/cwl/hpc.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/install.py
- bcbio/ngsalign/star.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/main.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sra.py
- bcbio/provenance/system.py
- + bcbio/qc/atac.py
- bcbio/qc/chipseq.py
- bcbio/qc/multiqc.py
- bcbio/qc/variant.py
- bcbio/rnaseq/arriba.py
- bcbio/rnaseq/bcbiornaseq.py
- bcbio/rnaseq/gtf.py
- bcbio/rnaseq/salmon.py
- bcbio/structural/lumpy.py
- bcbio/upload/__init__.py
- bcbio/variation/coverage.py
- bcbio/variation/gatkjoint.py
- bcbio/variation/peddy.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/3d54858ff5d12d0ae10c7c026b7869b11f10ccfa...b5b9b7df5a1eed234d2ed63c0c4a77bae1611b27

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/3d54858ff5d12d0ae10c7c026b7869b11f10ccfa...b5b9b7df5a1eed234d2ed63c0c4a77bae1611b27
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