[med-svn] [Git][med-team/libbio-db-swissprot-perl][upstream] New upstream version 1.7.4
Michael R. Crusoe
gitlab at salsa.debian.org
Wed Jan 1 12:08:01 GMT 2020
Michael R. Crusoe pushed to branch upstream at Debian Med / libbio-db-swissprot-perl
Commits:
1b30acfa by Michael R. Crusoe at 2020-01-01T11:57:42Z
New upstream version 1.7.4
- - - - -
7 changed files:
- Changes
- META.json
- META.yml
- Makefile.PL
- dist.ini
- lib/Bio/DB/SwissProt.pm
- t/SwissProt.t
Changes:
=====================================
Changes
=====================================
@@ -1,5 +1,8 @@
Summary of important user-visible changes for Bio-DB-SwissProt
--------------------------------------------------------------
+1.7.4 2019-12-07 16:07:46-06:00 America/Chicago
+ * Fixes for issues related to using Bio::Root::Test (issue #3)
+
1.7.3 2019-11-27 18:56:08-06:00 America/Chicago
* First release after split from bioperl-live.
=====================================
META.json
=====================================
@@ -39,12 +39,14 @@
},
"test" : {
"requires" : {
- "Bio::Root::Test" : "0",
"File::Spec" : "0",
"IO::Handle" : "0",
"IPC::Open3" : "0",
"Test::More" : "0",
+ "Test::Needs" : "0",
+ "Test::RequiresInternet" : "0",
"perl" : "5.006",
+ "utf8" : "0",
"warnings" : "0"
}
}
@@ -62,7 +64,7 @@
"web" : "https://github.com/bioperl/bio-db-swissprot"
}
},
- "version" : "1.7.3",
+ "version" : "1.7.4",
"x_Dist_Zilla" : {
"perl" : {
"version" : "5.028001"
@@ -298,7 +300,7 @@
"branch" : null,
"changelog" : "Changes",
"signed" : 0,
- "tag" : "Bio-DB-SwissProt-v1.7.3",
+ "tag" : "Bio-DB-SwissProt-v1.7.4",
"tag_format" : "%N-v%v",
"tag_message" : "%N-v%v"
},
=====================================
META.yml
=====================================
@@ -3,12 +3,14 @@ abstract: 'Database object interface to SwissProt retrieval'
author:
- 'Jason Stajich <jason at bioperl.org>'
build_requires:
- Bio::Root::Test: '0'
File::Spec: '0'
IO::Handle: '0'
IPC::Open3: '0'
Test::More: '0'
+ Test::Needs: '0'
+ Test::RequiresInternet: '0'
perl: '5.006'
+ utf8: '0'
warnings: '0'
configure_requires:
ExtUtils::MakeMaker: '0'
@@ -28,7 +30,7 @@ resources:
bugtracker: https://github.com/bioperl/bio-db-swissprot/issues
homepage: https://metacpan.org/release/Bio-DB-SwissProt
repository: git://github.com/bioperl/bio-db-swissprot.git
-version: 1.7.3
+version: 1.7.4
x_Dist_Zilla:
perl:
version: '5.028001'
@@ -213,7 +215,7 @@ x_Dist_Zilla:
branch: ~
changelog: Changes
signed: 0
- tag: Bio-DB-SwissProt-v1.7.3
+ tag: Bio-DB-SwissProt-v1.7.4
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
=====================================
Makefile.PL
=====================================
@@ -23,14 +23,16 @@ my %WriteMakefileArgs = (
"strict" => 0
},
"TEST_REQUIRES" => {
- "Bio::Root::Test" => 0,
"File::Spec" => 0,
"IO::Handle" => 0,
"IPC::Open3" => 0,
"Test::More" => 0,
+ "Test::Needs" => 0,
+ "Test::RequiresInternet" => 0,
+ "utf8" => 0,
"warnings" => 0
},
- "VERSION" => "1.7.3",
+ "VERSION" => "1.7.4",
"test" => {
"TESTS" => "t/*.t"
}
@@ -39,14 +41,16 @@ my %WriteMakefileArgs = (
my %FallbackPrereqs = (
"Bio::DB::WebDBSeqI" => 0,
- "Bio::Root::Test" => 0,
"File::Spec" => 0,
"HTTP::Request::Common" => 0,
"IO::Handle" => 0,
"IPC::Open3" => 0,
"Test::More" => 0,
+ "Test::Needs" => 0,
+ "Test::RequiresInternet" => 0,
"base" => 0,
"strict" => 0,
+ "utf8" => 0,
"warnings" => 0
);
=====================================
dist.ini
=====================================
@@ -1,5 +1,5 @@
name = Bio-DB-SwissProt
-version = 1.7.3
+version = 1.7.4
author = Jason Stajich <jason at bioperl.org>
copyright_holder = Jason Stajich <jason at bioperl.org>
license = Perl_5
=====================================
lib/Bio/DB/SwissProt.pm
=====================================
@@ -108,7 +108,7 @@ methods. Internal methods are usually preceded with a _
# Let the code begin...
package Bio::DB::SwissProt;
-$Bio::DB::SwissProt::VERSION = '1.7.3';
+$Bio::DB::SwissProt::VERSION = '1.7.4';
use strict;
use HTTP::Request::Common;
=====================================
t/SwissProt.t
=====================================
@@ -1,20 +1,14 @@
-# -*-Perl-*- Test Harness script for Bioperl
-# $Id$
+#!/usr/bin/env perl
+use utf8;
use strict;
+use warnings;
-BEGIN {
- use Bio::Root::Test;
+use Test::More;
+use Test::Needs qw(LWP::UserAgent HTTP::Request::Common Data::Stag);
+use Test::RequiresInternet;
- test_begin(-tests => 23,
- -requires_modules => [qw(IO::String
- LWP::UserAgent
- HTTP::Request::Common
- Data::Stag)],
- -requires_networking => 1);
-
- use_ok('Bio::DB::SwissProt');
-}
+use Bio::DB::SwissProt;
ok my $gb = Bio::DB::SwissProt->new(-retrievaltype => 'pipeline',
-delay => 0);
@@ -31,6 +25,7 @@ my %expected_lengths = (
my ($seq, $seqio);
+# keep the SKIP block to deal with intermittent fails
SKIP: {
eval {$seq = $gb->get_Seq_by_id('YNB3_YEAST');};
skip "Couldn't connect to SwissProt with Bio::DB::SwissProt.pm. Skipping those tests", 14 if $@;
@@ -92,4 +87,6 @@ SKIP: {
like($map->{PYRC_YEAST}[0], qr/^[A-Z0-9]/);
}
+done_testing();
+
1;
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5
--
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5
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