[med-svn] [Git][med-team/sibelia][master] 4 commits: routine-update: debhelper-compat 12

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / sibelia


Commits:
42b79ebd by Andreas Tille at 2020-01-04T21:00:37+01:00
routine-update: debhelper-compat 12

- - - - -
4dc66a48 by Andreas Tille at 2020-01-04T21:01:07+01:00
routine-update: Standards-Version: 4.4.1

- - - - -
83edc701 by Andreas Tille at 2020-01-04T21:01:35+01:00
Set upstream metadata fields: Bug-Database.
- - - - -
f16847f3 by Andreas Tille at 2020-01-04T21:02:52+01:00
Really upload to new

- - - - -


4 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -2,4 +2,4 @@ sibelia (3.0.7+dfsg-1) unstable; urgency=medium
 
   * Initial release (Closes: #922377)
 
- -- Andreas Tille <tille at debian.org>  Fri, 15 Feb 2019 11:15:26 +0100
+ -- Andreas Tille <tille at debian.org>  Sat, 04 Jan 2020 21:01:36 +0100


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-12


=====================================
debian/control
=====================================
@@ -2,11 +2,12 @@ Source: sibelia
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: non-free/science
+XS-Autobuild: no
 Priority: optional
-Build-Depends: debhelper (>= 12~),
+Build-Depends: debhelper-compat (= 12),
                cmake,
                libdivsufsort-dev
-Standards-Version: 4.3.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/sibelia
 Vcs-Git: https://salsa.debian.org/med-team/sibelia.git
 Homepage: http://bioinf.spbau.ru/sibelia
@@ -34,7 +35,7 @@ Description: comparative genomics tool
 
 Package: sibelia-examples
 Architecture: all
-Depends: ${misc:Depends},
+Depends: ${misc:Depends}
 Description: comparative genomics tool (example data)
  Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
  It assists biologists in analysing the genomic variations that correlate
@@ -50,24 +51,3 @@ Description: comparative genomics tool (example data)
   3) rearrangements that transform one genome to other genomes.
  .
  This package contains example data for sibelia.
-
-#Package: sibelia-annotate
-#Architecture: all
-#Depends: ${misc:Depends},
-#         python,
-#         openjdk-11-jre | default-jre
-#Description: comparative genomics tool (annotation tool using snpEFF)
-# Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool:
-# It assists biologists in analysing the genomic variations that correlate
-# with pathogens, or the genomic changes that help microorganisms adapt in
-# different environments. Sibelia will also be helpful for the
-# evolutionary and genome rearrangement studies for multiple strains of
-# microorganisms.
-# .
-# Sibelia is useful in finding:
-# .
-#  1) shared regions,
-#  2) regions that present in one group of genomes but not in others,
-#  3) rearrangements that transform one genome to other genomes.
-# .
-# This package contains an annotation tool using snpEFF.


=====================================
debian/upstream/metadata
=====================================
@@ -1,20 +1,21 @@
 Reference:
- - Author: >
+- Author: >
     Ilya Minkin and Anand Patel and Mikhail Kolmogorov and Nikolay Vyahhi and
     Son Pham
-   Title: >
+  Title: >
     Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for
     Closely Related Microbial Genomes
-   Journal: Lecture Notes in Computer Science
-   Year: 2013
-   DOI: 10.1007/978-3-642-40453-5_17
-   URL: https://link.springer.com/chapter/10.1007/978-3-642-40453-5_17
+  Journal: Lecture Notes in Computer Science
+  Year: 2013
+  DOI: 10.1007/978-3-642-40453-5_17
+  URL: https://link.springer.com/chapter/10.1007/978-3-642-40453-5_17
 Registry:
- - Name: bio.tools
-   Entry: sibelia
- - Name: OMICtools
-   Entry: OMICS_11719
- - Nane: conda:bioconda
-   Entry: sibelia
- - Name: SciCrunch
-   Entry: NA
+- Name: bio.tools
+  Entry: sibelia
+- Name: OMICtools
+  Entry: OMICS_11719
+- Nane: conda:bioconda
+  Entry: sibelia
+- Name: SciCrunch
+  Entry: NA
+Bug-Database: https://github.com/bioinf/Sibelia/issues



View it on GitLab: https://salsa.debian.org/med-team/sibelia/compare/34087e25af090e70107f741112624dc0358198eb...f16847f3fc18f50338218a04241bcdc2f06def1e

-- 
View it on GitLab: https://salsa.debian.org/med-team/sibelia/compare/34087e25af090e70107f741112624dc0358198eb...f16847f3fc18f50338218a04241bcdc2f06def1e
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