[med-svn] [Git][med-team/python-cogent][master] 14 commits: New upstream version 2019.9.13a

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / python-cogent


Commits:
06adacd8 by Andreas Tille at 2020-01-07T17:23:32+01:00
New upstream version 2019.9.13a
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fcd569ca by Andreas Tille at 2020-01-07T17:42:48+01:00
Close bugs

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f921df4b by Andreas Tille at 2020-01-07T20:11:23+01:00
Project moved from bitbucket to github

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69703330 by Andreas Tille at 2020-01-07T20:12:00+01:00
routine-update: New upstream version

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8c762cdb by Andreas Tille at 2020-01-07T20:12:01+01:00
New upstream version 2019.12.6a
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99d61ccd by Andreas Tille at 2020-01-07T20:12:26+01:00
Update upstream source from tag 'upstream/2019.12.6a'

Update to upstream version '2019.12.6a'
with Debian dir 546135e306aa17aed51702b3cc5a60ee84b7d669
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3b1894cd by Andreas Tille at 2020-01-07T20:12:36+01:00
R-U: Trailing whitespace in debian/changelog

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4b7e0fbb by Andreas Tille at 2020-01-07T20:12:36+01:00
R-U: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g

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438d9063 by Andreas Tille at 2020-01-07T20:12:37+01:00
Trim trailing whitespace.

Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html

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125ed929 by Andreas Tille at 2020-01-07T20:12:38+01:00
Remove duplicate line from changelog.
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86db0464 by Andreas Tille at 2020-01-07T20:12:41+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
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d5166ae0 by Andreas Tille at 2020-01-07T20:12:42+01:00
Fix day-of-week for changelog entry 1.5.3-1.

Fixes: lintian: debian-changelog-has-wrong-day-of-week
See-also: https://lintian.debian.org/tags/debian-changelog-has-wrong-day-of-week.html

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06ec519b by Andreas Tille at 2020-01-07T22:03:29+01:00
Fix Build-Depends

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4911cb9d by Andreas Tille at 2020-01-07T22:04:08+01:00
Try fixing sphinx issue by adding sphinx.ext.napoleon

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30 changed files:

- .gitignore
- − .hg_archival.txt
- .hgignore
- .hgtags
- + .readthedocs.yml
- ChangeLog
- README.md
- + azure-pipelines.yml
- − bitbucket-pipelines.yml
- debian/changelog
- debian/control
- debian/copyright
- + debian/patches/series
- + debian/patches/sphinx.patch
- debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch
- − doc/ChangeLog.rst
- doc/Makefile
- − doc/_static/google_feed.js
- + doc/_static/plotly-latest.min.js
- + doc/_static/require.min.js
- + doc/api/alignment/alignment.rst
- + doc/api/alignment/classes/cogent3.core.alignment.Alignment.rst
- + doc/api/alignment/classes/cogent3.core.alignment.ArrayAlignment.rst
- + doc/api/alignment/classes/cogent3.core.alignment.SequenceCollection.rst
- + doc/api/index.rst
- + doc/api/sequence/classes/cogent3.core.sequence.DnaSequence.rst
- + doc/api/sequence/classes/cogent3.core.sequence.RnaSequence.rst
- + doc/api/sequence/sequence.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/9409f45e8b7d0c78b494e5e9b7378ad683890101...4911cb9db3a7ed0fc3e63a1bee1f4f16d8833bb7

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/9409f45e8b7d0c78b494e5e9b7378ad683890101...4911cb9db3a7ed0fc3e63a1bee1f4f16d8833bb7
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