[med-svn] [Git][med-team/augustus][master] Add EDAM

[Matúš Kalaš]

Matúš Kalaš pushed to branch master at Debian Med / augustus


Commits:
e5dcd007 by Matúš Kalaš at 2020-01-08T16:32:10+00:00
Add EDAM

Based on https://bio.tools/augustus
The "training_the_parameters_for_individual_species_of_interest" operation does not have a matching EDAM concept (in bio.tools this is "I don't know", auto-substituted by the top-level concept "Operation")
- - - - -


1 changed file:

- + debian/upstream/edam


Changes:

=====================================
debian/upstream/edam
=====================================
@@ -0,0 +1,24 @@
+---
+ontology: EDAM (1.23)
+topic:
+  - Gene transcripts
+  - Gene and protein families
+scopes:
+  - name: summary
+    function:
+      - Gene prediction
+  - name: gene_prediction_using_experimental_evidence_(gene_products)
+    function:
+      - Gene prediction
+  - name: ab-initio_gene_prediction
+    function:
+      - Ab-initio gene prediction
+  - name: multi-genome_annotation_(simultaneous_gene_finding_in_multiple_genomes)
+    function:
+      - Homology-based gene prediction
+  - name: gene_prediction_using_protein_sequence_profiles
+    function:
+      - Homology-based gene prediction
+  - name: training_the_parameters_for_individual_species_of_interest
+    function:
+      - Optimisation and refinement



View it on GitLab: https://salsa.debian.org/med-team/augustus/commit/e5dcd0077327f736ef6da1c619af2d697c088ae0

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View it on GitLab: https://salsa.debian.org/med-team/augustus/commit/e5dcd0077327f736ef6da1c619af2d697c088ae0
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