[med-svn] [Git][med-team/qtltools][master] 4 commits: Make really sure examples.tar.xz will not contain itself

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / qtltools


Commits:
4a1c9eb8 by Andreas Tille at 2020-01-11T19:40:57+01:00
Make really sure examples.tar.xz will not contain itself

- - - - -
aa1ddea8 by Andreas Tille at 2020-01-11T19:41:12+01:00
routine-update: debhelper-compat 12

- - - - -
732a7e76 by Andreas Tille at 2020-01-11T19:41:23+01:00
Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
- - - - -
5c40adf2 by Andreas Tille at 2020-01-11T20:49:12+01:00
Exclude examples.tar.xz properly

- - - - -


5 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+qtltools (1.2+dfsg-3) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Make really sure examples.tar.xz will not contain itself
+  * debhelper-compat 12
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata
+    (already present in machine-readable debian/copyright).
+
+ -- Andreas Tille <tille at debian.org>  Sat, 11 Jan 2020 19:40:18 +0100
+
 qtltools (1.2+dfsg-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-12


=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Dylan Aïssi <daissi at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 12~),
+Build-Depends: debhelper-compat (= 12),
                libblas-dev,
                libboost-iostreams-dev,
                libboost-program-options-dev,


=====================================
debian/rules
=====================================
@@ -19,5 +19,6 @@ override_dh_auto_clean:
 	dh_auto_clean
 
 override_dh_install:
-	cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
+	cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \
+	    tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz
 	dh_install


=====================================
debian/upstream/metadata
=====================================
@@ -1,32 +1,29 @@
-Contact: Olivier Delaneau <olivier.delaneau at gmail.com>
-Name: QTLtools
 Reference:
-  - Author: >
-     Olivier Delaneau and Halit Ongen and Andrew A. Brown and Alexandre
-     Fort and Nikolaos I. Panousis and Emmanouil T. Dermitzakis
-    Title: >
-     A complete tool set for molecular QTL discovery and analysis
-    Journal: Nature Communications
-    Year: 2017
-    DOI: 10.1038/ncomms15452
-    URL: https://www.nature.com/articles/ncomms15452
-    eprint: https://www.nature.com/articles/ncomms15452.pdf
-  - Author: >
-     Alexandre Fort and Nikolaos I. Panousis and Marco Garieri and
-     Stylianos E. Antonarakis and Tuuli Lappalainen and Emmanouil
-     T. Dermitzakis and Olivier Delaneau
-    Title: >
-     MBV: a method to solve sample mislabeling and detect technical bias
-     in large combined genotype and sequencing assay datasets
-    Journal: Bioinformatics
-    Year: 2017
-    DOI: 10.1093/bioinformatics/btx074
-    URL: "https://academic.oup.com/bioinformatics/article-lookup/doi/\
-     10.1093/bioinformatics/btx074"
+- Author: >
+    Olivier Delaneau and Halit Ongen and Andrew A. Brown and Alexandre
+    Fort and Nikolaos I. Panousis and Emmanouil T. Dermitzakis
+  Title: >
+    A complete tool set for molecular QTL discovery and analysis
+  Journal: Nature Communications
+  Year: 2017
+  DOI: 10.1038/ncomms15452
+  URL: https://www.nature.com/articles/ncomms15452
+  eprint: https://www.nature.com/articles/ncomms15452.pdf
+- Author: >
+    Alexandre Fort and Nikolaos I. Panousis and Marco Garieri and
+    Stylianos E. Antonarakis and Tuuli Lappalainen and Emmanouil
+    T. Dermitzakis and Olivier Delaneau
+  Title: >
+    MBV: a method to solve sample mislabeling and detect technical bias
+    in large combined genotype and sequencing assay datasets
+  Journal: Bioinformatics
+  Year: 2017
+  DOI: 10.1093/bioinformatics/btx074
+  URL: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btx074
 Registry:
-  - Name: SciCrunch
-    Entry: NA
-  - Name: OMICtools
-    Entry: OMICS_18457
-  - Name: bio.tools
-    Entry: qtltools
+- Name: SciCrunch
+  Entry: NA
+- Name: OMICtools
+  Entry: OMICS_18457
+- Name: bio.tools
+  Entry: qtltools



View it on GitLab: https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb

-- 
View it on GitLab: https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb
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