[med-svn] [Git][med-team/bedtools][master] 5 commits: routine-update: New upstream version

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bedtools


Commits:
13f2a451 by Steffen Moeller at 2020-01-18T01:44:47+01:00
routine-update: New upstream version

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c1be661e by Steffen Moeller at 2020-01-18T01:44:48+01:00
New upstream version 2.29.2+dfsg
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4b053ba5 by Steffen Moeller at 2020-01-18T01:45:36+01:00
Update upstream source from tag '2.29.2+dfsg'

Update to upstream version '2.29.2+dfsg'
with Debian dir 4648d5b3f8beaae861eed67b8798c53cc453fa29
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217fa5a2 by Steffen Moeller at 2020-01-18T01:50:31+01:00
Adjusted patch

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d6f90339 by Steffen Moeller at 2020-01-18T20:40:48+01:00
Tests fail on 'intersect'

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30 changed files:

- + .github/workflows/main.yml
- − .travis.yml
- Makefile
- debian/changelog
- debian/patches/2to3.patch
- docs/conf.py
- docs/content/history.rst
- docs/content/installation.rst
- src/bamToFastq/bamToFastq.cpp
- src/fastaFromBed/fastaFromBed.cpp
- src/fastaFromBed/fastaFromBed.h
- src/fastaFromBed/fastaFromBedMain.cpp
- src/flankBed/flankBed.cpp
- + src/flankBed/test.fa
- + src/flankBed/test.fa.fai
- + src/flankBed/test.gff
- src/genomeCoverageBed/genomeCoverageBed.cpp
- src/genomeCoverageBed/genomeCoverageBed.h
- src/reldist/reldist.cpp
- src/slopBed/slopBed.cpp
- src/utils/BamTools/include/BamAlignment.hpp
- src/utils/BamTools/include/SamHeader.hpp
- src/utils/Contexts/ContextBase.cpp
- src/utils/Contexts/ContextBase.h
- src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp
- src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h
- src/utils/FileRecordTools/Records/BlockMgr.cpp
- src/utils/FileRecordTools/Records/BlockMgr.h
- src/utils/GenomeFile/NewGenomeFile.cpp
- src/utils/NewChromsweep/NewChromsweep.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bedtools/compare/4a6c2f309254e8a90df769ab24954c222cea6284...d6f903391a46e1edb96935f70ca6d525cefda8cd

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View it on GitLab: https://salsa.debian.org/med-team/bedtools/compare/4a6c2f309254e8a90df769ab24954c222cea6284...d6f903391a46e1edb96935f70ca6d525cefda8cd
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