[med-svn] [Git][med-team/blasr][master] 4 commits: Standards-Version: 4.5.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / blasr


Commits:
2a6e83dd by Andreas Tille at 2020-01-22T14:55:56+01:00
Standards-Version: 4.5.0

- - - - -
b189a925 by Andreas Tille at 2020-01-22T17:44:16+01:00
Versioned Build-Depends: libblasr-dev (>= 5.3.3+dfsg-2)

- - - - -
6484173a by Andreas Tille at 2020-01-22T17:48:23+01:00
Adapt meson patch

- - - - -
f2b2a02a by Andreas Tille at 2020-01-22T17:51:42+01:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/use_debian_packaged_pblibs.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+blasr (5.3.3+dfsg-4) unstable; urgency=medium
+
+  * Standards-Version: 4.5.0
+  * Versioned Build-Depends: libblasr-dev (>= 5.3.3+dfsg-2)
+    Closes: #949543
+
+ -- Andreas Tille <tille at debian.org>  Wed, 22 Jan 2020 17:48:33 +0100
+
 blasr (5.3.3+dfsg-3) unstable; urgency=medium
 
   * Build-Depends: s/python/python3/


=====================================
debian/control
=====================================
@@ -16,8 +16,8 @@ Build-Depends: debhelper-compat (= 12),
                libpbdata-dev,
                libpbcopper-dev,
                libgtest-dev,
-               libblasr-dev (>= 5.3.1+dfsg-2)
-Standards-Version: 4.4.1
+               libblasr-dev (>= 5.3.3+dfsg-2)
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/blasr
 Vcs-Git: https://salsa.debian.org/med-team/blasr.git
 Homepage: https://github.com/PacificBiosciences/blasr


=====================================
debian/patches/use_debian_packaged_pblibs.patch
=====================================
@@ -5,7 +5,7 @@ Description: Add some missing libraries to linker
 
 --- a/meson.build
 +++ b/meson.build
-@@ -51,15 +51,21 @@ blasr_thread_dep = dependency('threads',
+@@ -51,15 +51,19 @@ blasr_thread_dep = dependency('threads',
  blasr_boost_dep = dependency('boost', required : true)
  
  # pbbam
@@ -22,15 +22,13 @@ Description: Add some missing libraries to linker
  
 -blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_zlib_dep]
 +# missing libs for linker
-+samwriter_pbdata_deps = cpp.find_library('pbdata')
-+blasr_pbihdf_deps = cpp.find_library('pbihdf')
 +blasr_pbcopper_deps = cpp.find_library('pbcopper')
 +
-+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep, samwriter_pbdata_deps, blasr_pbihdf_deps]
++blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep]
  
  ########################
  # sources + executable #
-@@ -101,7 +107,7 @@ blasr_static_impl = static_library(
+@@ -101,7 +105,7 @@ blasr_static_impl = static_library(
    blasr_sources,
    install : false,
    dependencies : blasr_deps,
@@ -39,7 +37,7 @@ Description: Add some missing libraries to linker
  
  blasr_main = executable(
    'blasr', [
-@@ -111,7 +117,7 @@ blasr_main = executable(
+@@ -111,7 +115,7 @@ blasr_main = executable(
    install : true,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,
@@ -48,7 +46,7 @@ Description: Add some missing libraries to linker
  
  blasr_utils_sawriter = executable(
    'sawriter', files([
-@@ -119,7 +125,7 @@ blasr_utils_sawriter = executable(
+@@ -119,7 +123,7 @@ blasr_utils_sawriter = executable(
    install : true,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,
@@ -57,7 +55,7 @@ Description: Add some missing libraries to linker
  
  blasr_utils_toAfg = executable(
    'toAfg', files([
-@@ -127,7 +133,7 @@ blasr_utils_toAfg = executable(
+@@ -127,7 +131,7 @@ blasr_utils_toAfg = executable(
    install : false,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,



View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/5ecea4eee0a07732d936eaf548b91977b35078f1...f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9

-- 
View it on GitLab: https://salsa.debian.org/med-team/blasr/compare/5ecea4eee0a07732d936eaf548b91977b35078f1...f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9
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