[med-svn] [Git][med-team/python-cogent][master] 6 commits: New upstream version 2020.6.30a0+dfsg

[Balint Reczey]

Balint Reczey pushed to branch master at Debian Med / python-cogent


Commits:
f1fb891f by Balint Reczey at 2020-07-03T12:04:49+02:00
New upstream version 2020.6.30a0+dfsg
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80ba0bae by Balint Reczey at 2020-07-03T12:04:55+02:00
Update upstream source from tag 'upstream/2020.6.30a0+dfsg'

Update to upstream version '2020.6.30a0+dfsg'
with Debian dir 8d7ddeca261ebb7d61fd8496a16bc70557869ef4
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aebf1d39 by Balint Reczey at 2020-07-06T10:38:29+02:00
Update changelog

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4987fd0a by Balint Reczey at 2020-07-06T10:38:33+02:00
Drop patches applied in new upstream release

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46efc953 by Balint Reczey at 2020-07-06T10:38:33+02:00
Refresh patches

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02f2f37b by Balint Reczey at 2020-07-06T10:38:33+02:00
Add new build dependencies:

- python3-sphinx-bootstrap-theme
- python3-sphinx-gallery
- python3-jupyter-sphinx
- python3-numba

- - - - -


29 changed files:

- + .github/dependabot.yml
- + .github/workflows/testing_develop.yml
- .gitignore
- .hgignore
- LICENSE
- MANIFEST.in
- README.md
- azure-pipelines.yml
- + c3dev-environment.yml
- debian/changelog
- debian/control
- − debian/patches/3bc0a8a413cb82ec6a3e86beaa0e2e71ad8ed3fb.patch
- − debian/patches/96ab670d76f88a188286017602c1c47463be5037.patch
- − debian/patches/9ea740ee6a936895f68af59537fd6171803aa7e6.patch
- debian/patches/series
- debian/patches/sphinx.patch
- doc/COGENT3_LICENSE.rst
- doc/Makefile
- + doc/api/sequence/classes/cogent3.core.sequence.ProteinSequence.rst
- doc/api/sequence/sequence.rst
- doc/app/align-codon.rst
- doc/app/align-nucleotide.rst
- doc/app/align-protein.rst
- − doc/app/available-apps.ipynb
- + doc/app/available-apps.rst
- − doc/app/dstore.ipynb
- + doc/app/dstore.rst
- − doc/app/evo-ancestral-states.ipynb
- + doc/app/evo-ancestral-states.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/b92f93b10ea3f06f3845d2a706e3508e9441632c...02f2f37bf16d0d8e31945a6e14855e36df103b3b

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/b92f93b10ea3f06f3845d2a706e3508e9441632c...02f2f37bf16d0d8e31945a6e14855e36df103b3b
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