Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fbcf7dc6 by Andreas Tille at 2020-07-08T13:43:57+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
+Last-Update: Wed, 08 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 189 | {covid-19,imaging} |
- orthanc | 96 | {covid-19,imaging,practice} |
- gdcm | 44 | {imaging-dev} |
+ dcmtk | 188 | {covid-19,imaging} |
+ orthanc | 95 | {covid-19,imaging,practice} |
+ gdcm | 45 | {imaging-dev} |
orthanc-wsi | 44 | {his,practice,covid-19,laboratory,imaging,oncology} |
- htsjdk | 30 | {bio-dev} |
+ htsjdk | 32 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
dicom3tools | 24 | {imaging} |
- dcm2niix | 23 | {imaging} |
dicomscope | 23 | {imaging} |
gnumed-server | 18 | {practice,covid-19} |
ngs-sdk | 18 | {bio-dev} |
@@ -20,31 +20,31 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
jebl2 | 12 | {bio-dev} |
minc-tools | 12 | {imaging} |
vtk-dicom | 11 | {imaging} |
- adun.app | 9 | {bio} |
biosig4c++ | 9 | {physics,imaging} |
libdivsufsort | 9 | {bio-dev} |
+ ngs-sdk | 9 | {bio-dev} |
openslide | 9 | {imaging} |
+ adun.app | 8 | {bio} |
dicompyler | 8 | {oncology} |
king | 8 | {imaging,typesetting} |
lagan | 8 | {bio} |
melting | 8 | {bio,cloud} |
- ngs-sdk | 8 | {bio-dev} |
plastimatch | 8 | {imaging} |
psychopy | 8 | {psychology} |
libminc | 7 | {imaging-dev} |
orthanc-webviewer | 7 | {imaging} |
stacks | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
+ biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
- king-probe | 6 | {bio} |
librg-utils-perl | 6 | {bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
paraclu | 6 | {cloud,bio} |
anfo | 5 | {bio,cloud} |
- biojava-live | 5 | {bio-dev} |
biomaj3-cli | 5 | {cloud} |
fastlink | 5 | {cloud,bio} |
getdata | 5 | {bio} |
+ king-probe | 5 | {bio} |
mlv-smile | 5 | {bio,cloud} |
ncbi-seg | 5 | {bio} |
obitools | 5 | {bio} |
@@ -57,6 +57,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
biomaj3-daemon | 4 | {bio} |
elastix | 4 | {imaging} |
gatb-core | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
mipe | 4 | {cloud,bio} |
neobio | 4 | {cloud,bio} |
orthanc-postgresql | 4 | {imaging} |
@@ -76,6 +78,7 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
bandage | 3 | {bio} |
brig | 3 | {bio} |
busco | 3 | {covid-19,bio} |
+ daligner | 3 | {bio-ngs,bio} |
ecopcr | 3 | {bio} |
edtsurf | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
@@ -85,8 +88,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
ipig | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
mrs | 3 | {bio} |
multiqc | 3 | {bio,covid-19} |
@@ -111,14 +112,15 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
beast2-mcmc | 2 | {bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
bio-rainbow | 2 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
canu | 2 | {bio} |
centrifuge | 2 | {bio,covid-19} |
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- daligner | 2 | {bio-ngs,bio} |
dascrubber | 2 | {bio} |
dazzdb | 2 | {bio} |
delly | 2 | {bio,covid-19} |
@@ -139,8 +141,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
metaphlan2 | 2 | {bio} |
murasaki | 2 | {bio} |
ncbi-vdb | 2 | {bio-dev} |
- oscar | 2 | {practice,tools,data} |
patman | 2 | {bio} |
+ pbdagcon | 2 | {bio} |
phast | 2 | {bio} |
phybin | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
@@ -171,7 +173,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
sweed | 2 | {bio} |
yaha | 2 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
- blasr | 1 | {bio,bio-ngs} |
cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
@@ -185,14 +186,15 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
+ oscar | 1 | {practice,tools,data} |
pbcopper | 1 | {bio-dev} |
- pbdagcon | 1 | {bio} |
phipack | 1 | {bio} |
plasmidseeker | 1 | {bio} |
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
rambo-k | 1 | {bio} |
relion | 1 | {bio} |
+ stringtie | 1 | {bio,covid-19} |
thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
velvetoptimiser | 1 | {bio} |
@@ -254,8 +256,8 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
pilercr | 0 | {bio} |
python-py2bit | 0 | {bio,bio-dev} |
quicktree | 0 | {bio,covid-19,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -265,7 +267,6 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
srf | 0 | {bio-dev} |
- stringtie | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
@@ -274,5 +275,5 @@ Last-Update: Wed, 08 Jul 2020 01:42:03 +0000
pycoqc | -1 | {covid-19,bio} |
shovill | -1 | {bio,covid-19} |
yanagiba | -1 | {bio,covid-19} |
-(301 rows)
+(302 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbcf7dc6c0bd83258b12ca9758d50d787a184644
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fbcf7dc6c0bd83258b12ca9758d50d787a184644
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200708/c7e4c7c5/attachment-0001.html>