Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
714e8089 by Andreas Tille at 2020-07-10T13:44:00+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,11 +1,11 @@
-Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
+Last-Update: Fri, 10 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {covid-19,imaging} |
- orthanc | 95 | {covid-19,imaging,practice} |
+ dcmtk | 187 | {covid-19,imaging} |
+ orthanc | 96 | {covid-19,imaging,practice} |
gdcm | 45 | {imaging-dev} |
- orthanc-wsi | 43 | {his,practice,covid-19,laboratory,imaging,oncology} |
+ orthanc-wsi | 44 | {his,practice,covid-19,laboratory,imaging,oncology} |
htsjdk | 33 | {bio-dev} |
dicom3tools | 24 | {imaging} |
dcm2niix | 23 | {imaging} |
@@ -16,9 +16,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
gdcm | 13 | {imaging-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
invesalius | 13 | {imaging} |
- pixelmed | 13 | {imaging} |
jebl2 | 12 | {bio-dev} |
minc-tools | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
vtk-dicom | 10 | {imaging} |
lagan | 9 | {bio} |
libdivsufsort | 9 | {bio-dev} |
@@ -28,17 +28,18 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
king | 8 | {imaging,typesetting} |
melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
+ orthanc-webviewer | 8 | {imaging} |
plastimatch | 8 | {imaging} |
psychopy | 8 | {psychology} |
dicompyler | 7 | {oncology} |
libminc | 7 | {imaging-dev} |
- librg-utils-perl | 7 | {bio} |
- orthanc-webviewer | 7 | {imaging} |
+ orthanc-dicomweb | 7 | {imaging,covid-19} |
stacks | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
+ librg-utils-perl | 6 | {bio} |
+ orthanc-mysql | 6 | {imaging} |
paraclu | 6 | {cloud,bio} |
anfo | 5 | {bio,cloud} |
biomaj3-cli | 5 | {cloud} |
@@ -48,7 +49,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
mlv-smile | 5 | {bio,cloud} |
ncbi-seg | 5 | {bio} |
obitools | 5 | {bio} |
- orthanc-mysql | 5 | {imaging} |
+ orthanc-postgresql | 5 | {imaging} |
+ rdp-alignment | 5 | {bio} |
+ rdp-readseq | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
staden | 5 | {bio} |
@@ -62,19 +65,16 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
mipe | 4 | {cloud,bio} |
neobio | 4 | {cloud,bio} |
nutsqlite | 4 | {tools} |
- orthanc-postgresql | 4 | {imaging} |
phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
predictprotein | 4 | {bio} |
pymia | 4 | {imaging-dev} |
qrisk2 | 4 | {practice} |
- rdp-alignment | 4 | {bio} |
- rdp-readseq | 4 | {bio} |
scythe | 4 | {bio} |
- snap-aligner | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
squizz | 4 | {bio,cloud} |
transtermhp | 4 | {bio} |
+ alter-sequence-alignment | 3 | {bio} |
ampliconnoise | 3 | {cloud,bio} |
bandage | 3 | {bio} |
brig | 3 | {bio} |
@@ -98,6 +98,7 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
probabel | 3 | {cloud,bio} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
salmon | 3 | {bio,covid-19} |
seqmagick | 3 | {covid-19,bio} |
@@ -105,7 +106,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
tnseq-transit | 3 | {covid-19,bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- alter-sequence-alignment | 2 | {bio} |
arden | 2 | {bio,cloud} |
assemblytics | 2 | {bio} |
baitfisher | 2 | {bio} |
@@ -156,7 +156,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
repeatmasker-recon | 2 | {bio} |
roguenarok | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
@@ -197,7 +196,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
trace2dbest | 1 | {bio} |
velvetoptimiser | 1 | {bio} |
volpack | 1 | {imaging-dev} |
- wtdbg2 | 1 | {covid-19} |
acedb | 0 | {cloud,bio} |
atropos | 0 | {bio} |
augur | 0 | {covid-19,bio} |
@@ -253,10 +251,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- python-py2bit | 0 | {bio,bio-dev} |
quicktree | 0 | {bio,covid-19,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -270,9 +267,10 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
+ wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
pycoqc | -1 | {covid-19,bio} |
shovill | -1 | {bio,covid-19} |
yanagiba | -1 | {bio,covid-19} |
-(301 rows)
+(299 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b
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