[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Fri Jul 10 14:44:05 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
714e8089 by Andreas Tille at 2020-07-10T13:44:00+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,11 +1,11 @@
-Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
+Last-Update: Fri, 10 Jul 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    186 | {covid-19,imaging}                                  | 
- orthanc                       |     95 | {covid-19,imaging,practice}                         | 
+ dcmtk                         |    187 | {covid-19,imaging}                                  | 
+ orthanc                       |     96 | {covid-19,imaging,practice}                         | 
  gdcm                          |     45 | {imaging-dev}                                       | 
- orthanc-wsi                   |     43 | {his,practice,covid-19,laboratory,imaging,oncology} | 
+ orthanc-wsi                   |     44 | {his,practice,covid-19,laboratory,imaging,oncology} | 
  htsjdk                        |     33 | {bio-dev}                                           | 
  dicom3tools                   |     24 | {imaging}                                           | 
  dcm2niix                      |     23 | {imaging}                                           | 
@@ -16,9 +16,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  gdcm                          |     13 | {imaging-dev}                                       | 
  insighttoolkit4               |     13 | {imaging-dev}                                       | 
  invesalius                    |     13 | {imaging}                                           | 
- pixelmed                      |     13 | {imaging}                                           | 
  jebl2                         |     12 | {bio-dev}                                           | 
  minc-tools                    |     12 | {imaging}                                           | 
+ pixelmed                      |     12 | {imaging}                                           | 
  vtk-dicom                     |     10 | {imaging}                                           | 
  lagan                         |      9 | {bio}                                               | 
  libdivsufsort                 |      9 | {bio-dev}                                           | 
@@ -28,17 +28,18 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  king                          |      8 | {imaging,typesetting}                               | 
  melting                       |      8 | {bio,cloud}                                         | 
  ngs-sdk                       |      8 | {bio-dev}                                           | 
+ orthanc-webviewer             |      8 | {imaging}                                           | 
  plastimatch                   |      8 | {imaging}                                           | 
  psychopy                      |      8 | {psychology}                                        | 
  dicompyler                    |      7 | {oncology}                                          | 
  libminc                       |      7 | {imaging-dev}                                       | 
- librg-utils-perl              |      7 | {bio}                                               | 
- orthanc-webviewer             |      7 | {imaging}                                           | 
+ orthanc-dicomweb              |      7 | {imaging,covid-19}                                  | 
  stacks                        |      7 | {bio}                                               | 
  treeview                      |      7 | {bio-phylogeny,bio}                                 | 
  biojava-live                  |      6 | {bio-dev}                                           | 
  ea-utils                      |      6 | {bio}                                               | 
- orthanc-dicomweb              |      6 | {imaging,covid-19}                                  | 
+ librg-utils-perl              |      6 | {bio}                                               | 
+ orthanc-mysql                 |      6 | {imaging}                                           | 
  paraclu                       |      6 | {cloud,bio}                                         | 
  anfo                          |      5 | {bio,cloud}                                         | 
  biomaj3-cli                   |      5 | {cloud}                                             | 
@@ -48,7 +49,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  mlv-smile                     |      5 | {bio,cloud}                                         | 
  ncbi-seg                      |      5 | {bio}                                               | 
  obitools                      |      5 | {bio}                                               | 
- orthanc-mysql                 |      5 | {imaging}                                           | 
+ orthanc-postgresql            |      5 | {imaging}                                           | 
+ rdp-alignment                 |      5 | {bio}                                               | 
+ rdp-readseq                   |      5 | {bio}                                               | 
  sibsim4                       |      5 | {bio,cloud}                                         | 
  sigma-align                   |      5 | {bio-phylogeny,cloud,bio}                           | 
  staden                        |      5 | {bio}                                               | 
@@ -62,19 +65,16 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  mipe                          |      4 | {cloud,bio}                                         | 
  neobio                        |      4 | {cloud,bio}                                         | 
  nutsqlite                     |      4 | {tools}                                             | 
- orthanc-postgresql            |      4 | {imaging}                                           | 
  phyutility                    |      4 | {bio,cloud}                                         | 
  piler                         |      4 | {bio}                                               | 
  predictprotein                |      4 | {bio}                                               | 
  pymia                         |      4 | {imaging-dev}                                       | 
  qrisk2                        |      4 | {practice}                                          | 
- rdp-alignment                 |      4 | {bio}                                               | 
- rdp-readseq                   |      4 | {bio}                                               | 
  scythe                        |      4 | {bio}                                               | 
- snap-aligner                  |      4 | {bio}                                               | 
  spread-phy                    |      4 | {bio-phylogeny,bio}                                 | 
  squizz                        |      4 | {bio,cloud}                                         | 
  transtermhp                   |      4 | {bio}                                               | 
+ alter-sequence-alignment      |      3 | {bio}                                               | 
  ampliconnoise                 |      3 | {cloud,bio}                                         | 
  bandage                       |      3 | {bio}                                               | 
  brig                          |      3 | {bio}                                               | 
@@ -98,6 +98,7 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  probabel                      |      3 | {cloud,bio}                                         | 
  rdp-classifier                |      3 | {bio}                                               | 
  relion                        |      3 | {bio}                                               | 
+ runcircos-gui                 |      3 | {bio}                                               | 
  saint                         |      3 | {bio}                                               | 
  salmon                        |      3 | {bio,covid-19}                                      | 
  seqmagick                     |      3 | {covid-19,bio}                                      | 
@@ -105,7 +106,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  tnseq-transit                 |      3 | {covid-19,bio}                                      | 
  tracetuner                    |      3 | {bio}                                               | 
  tvc                           |      3 | {bio}                                               | 
- alter-sequence-alignment      |      2 | {bio}                                               | 
  arden                         |      2 | {bio,cloud}                                         | 
  assemblytics                  |      2 | {bio}                                               | 
  baitfisher                    |      2 | {bio}                                               | 
@@ -156,7 +156,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  repeatmasker-recon            |      2 | {bio}                                               | 
  roguenarok                    |      2 | {bio}                                               | 
  rtax                          |      2 | {cloud,bio}                                         | 
- runcircos-gui                 |      2 | {bio}                                               | 
  samblaster                    |      2 | {covid-19,bio}                                      | 
  samtools-legacy               |      2 | {bio-dev}                                           | 
  scrm                          |      2 | {bio}                                               | 
@@ -197,7 +196,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  trace2dbest                   |      1 | {bio}                                               | 
  velvetoptimiser               |      1 | {bio}                                               | 
  volpack                       |      1 | {imaging-dev}                                       | 
- wtdbg2                        |      1 | {covid-19}                                          | 
  acedb                         |      0 | {cloud,bio}                                         | 
  atropos                       |      0 | {bio}                                               | 
  augur                         |      0 | {covid-19,bio}                                      | 
@@ -253,10 +251,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  parallel-fastq-dump           |      0 | {covid-19}                                          | 
  pbseqlib                      |      0 | {bio-dev}                                           | 
  pilercr                       |      0 | {bio}                                               | 
- python-py2bit                 |      0 | {bio,bio-dev}                                       | 
  quicktree                     |      0 | {bio,covid-19,bio-phylogeny}                        | 
- relion                        |      0 | {bio-dev}                                           | 
  relion                        |      0 | {bio}                                               | 
+ relion                        |      0 | {bio-dev}                                           | 
  sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
  seq-gen                       |      0 | {bio}                                               | 
@@ -270,9 +267,10 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
  varna                         |      0 | {bio}                                               | 
  varscan                       |      0 | {covid-19,bio}                                      | 
  vtk-dicom                     |      0 | {imaging-dev}                                       | 
+ wtdbg2                        |      0 | {covid-19}                                          | 
  bustools                      |     -1 | {bio,covid-19}                                      | 
  pycoqc                        |     -1 | {covid-19,bio}                                      | 
  shovill                       |     -1 | {bio,covid-19}                                      | 
  yanagiba                      |     -1 | {bio,covid-19}                                      | 
-(301 rows)
+(299 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b
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