[med-svn] [Git][med-team/salmon][master] 2 commits: refresh pufferfish

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / salmon


Commits:
bb548091 by Michael R. Crusoe at 2020-07-16T13:44:30+02:00
refresh pufferfish

- - - - -
432a1944 by Michael R. Crusoe at 2020-07-16T13:54:36+02:00
release 1.3.0+ds1-1

- - - - -


30 changed files:

- debian/changelog
- debian/external/install/include/pufferfish/BooPHF.hpp
- debian/external/install/include/pufferfish/CanonicalKmer.hpp
- debian/external/install/include/pufferfish/Kmer.hpp
- debian/external/install/include/pufferfish/MemChainer.hpp
- debian/external/install/include/pufferfish/MemCollector.hpp
- debian/external/install/include/pufferfish/ProgOpts.hpp
- debian/external/install/include/pufferfish/PuffAligner.hpp
- debian/external/install/include/pufferfish/PufferfishBaseIndex.hpp
- debian/external/install/include/pufferfish/PufferfishIndex.hpp
- debian/external/install/include/pufferfish/PufferfishLossyIndex.hpp
- debian/external/install/include/pufferfish/PufferfishSparseIndex.hpp
- debian/external/install/include/pufferfish/SAMWriter.hpp
- debian/external/install/include/pufferfish/Util.hpp
- debian/external/install/include/pufferfish/compact_vector/compact_vector.hpp
- debian/external/install/include/pufferfish/ksw2pp/KSW2Aligner.hpp
- debian/external/install/include/pufferfish/ksw2pp/ksw2.h
- debian/external/install/include/pufferfish/sparsepp/spp.h
- debian/external/install/include/pufferfish/sparsepp/spp_utils.h
- debian/external/pufferfish/CMakeLists.txt
- debian/external/pufferfish/external/twopaco/graphdump/compact_vector/compact_vector.hpp
- debian/external/pufferfish/external/twopaco/graphdump/graphdumpBinaryWriter.hpp
- debian/external/pufferfish/include/BooPHF.hpp
- debian/external/pufferfish/include/CanonicalKmer.hpp
- debian/external/pufferfish/include/Kmer.hpp
- debian/external/pufferfish/include/MemChainer.hpp
- debian/external/pufferfish/include/MemCollector.hpp
- debian/external/pufferfish/include/ProgOpts.hpp
- debian/external/pufferfish/include/PuffAligner.hpp
- debian/external/pufferfish/include/PufferfishBaseIndex.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/b3ba025bac81ed5b94b8f48c32c791c43d5c9d42...432a1944beaa0b5f28f73c99d669d06e63a20672

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View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/b3ba025bac81ed5b94b8f48c32c791c43d5c9d42...432a1944beaa0b5f28f73c99d669d06e63a20672
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